Abstract
Gene expression analysis of low abundance genes remains difficult when DNA microarrays are performed on standard glass substrates. However, we have shown that by using photonic crystals (PC) made on quartz substrates, the fluorescence intensity of Cyanine-5 (Cy5) labeled microarray spots is greatly enhanced. In a 1-color microarray experiment studying gene expression of soybean cotyledon tissue, an average signal enhancement factor of 17.8 was observed on the PC. Furthermore, twice as many genes were detectable on these PCs as compared to glass. By improving the sensitivity of this fluorescent assay, low expression genes that were undetectable on glass were quantified on the PC.
| Original language | English (US) |
|---|---|
| Title of host publication | 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011 |
| Pages | 26-29 |
| Number of pages | 4 |
| DOIs | |
| State | Published - Dec 26 2011 |
| Event | 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011 - Boston, MA, United States Duration: Aug 30 2011 → Sep 3 2011 |
Publication series
| Name | Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS |
|---|---|
| ISSN (Print) | 1557-170X |
Other
| Other | 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011 |
|---|---|
| Country | United States |
| City | Boston, MA |
| Period | 8/30/11 → 9/3/11 |
Fingerprint
ASJC Scopus subject areas
- Signal Processing
- Biomedical Engineering
- Computer Vision and Pattern Recognition
- Health Informatics
Cite this
Using photonic crystal enhanced fluorescence on quartz substrates to improve the sensitivity of DNA microarrays. / George, Sherine; Pokhriyal, Anusha; Jones, Sarah I.; Lu, Meng; Vodkin, Lila O.; Cunningham, Brian T.
33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011. 2011. p. 26-29 6089888 (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
}
TY - GEN
T1 - Using photonic crystal enhanced fluorescence on quartz substrates to improve the sensitivity of DNA microarrays
AU - George, Sherine
AU - Pokhriyal, Anusha
AU - Jones, Sarah I.
AU - Lu, Meng
AU - Vodkin, Lila O.
AU - Cunningham, Brian T.
PY - 2011/12/26
Y1 - 2011/12/26
N2 - Gene expression analysis of low abundance genes remains difficult when DNA microarrays are performed on standard glass substrates. However, we have shown that by using photonic crystals (PC) made on quartz substrates, the fluorescence intensity of Cyanine-5 (Cy5) labeled microarray spots is greatly enhanced. In a 1-color microarray experiment studying gene expression of soybean cotyledon tissue, an average signal enhancement factor of 17.8 was observed on the PC. Furthermore, twice as many genes were detectable on these PCs as compared to glass. By improving the sensitivity of this fluorescent assay, low expression genes that were undetectable on glass were quantified on the PC.
AB - Gene expression analysis of low abundance genes remains difficult when DNA microarrays are performed on standard glass substrates. However, we have shown that by using photonic crystals (PC) made on quartz substrates, the fluorescence intensity of Cyanine-5 (Cy5) labeled microarray spots is greatly enhanced. In a 1-color microarray experiment studying gene expression of soybean cotyledon tissue, an average signal enhancement factor of 17.8 was observed on the PC. Furthermore, twice as many genes were detectable on these PCs as compared to glass. By improving the sensitivity of this fluorescent assay, low expression genes that were undetectable on glass were quantified on the PC.
UR - http://www.scopus.com/inward/record.url?scp=84055213055&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84055213055&partnerID=8YFLogxK
U2 - 10.1109/IEMBS.2011.6089888
DO - 10.1109/IEMBS.2011.6089888
M3 - Conference contribution
C2 - 22254242
AN - SCOPUS:84055213055
SN - 9781424441211
T3 - Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS
SP - 26
EP - 29
BT - 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2011
ER -