TY - JOUR
T1 - Understanding application performance via micro-benchmarks on three large supercomputers
T2 - Intrepid, Ranger and Jaguar
AU - Bhatelé, Abhinav
AU - Wesolowski, Lukasz
AU - Bohm, Eric
AU - Solomonik, Edgar
AU - Kalé, Laxmikant V.
PY - 2010/11
Y1 - 2010/11
N2 - The emergence of new parallel architectures presents new challenges for application developers. Supercomputers vary in processor speed, network topology, interconnect communication characteristics and memory subsystems. This paper presents a performance comparison of three of the fastest machines in the world: IBM's Blue Gene/P installation at ANL (Intrepid), the SUN-Infiniband cluster at TACC (Ranger) and Cray's XT4 installation at ORNL (Jaguar). Comparisons are based on three applications selected by NSF for the Track 1 proposal to benchmark the Blue Waters system: NAMD, MILC and a turbulence code, DNS. We present a comprehensive overview of the architectural details of each of these machines and a comparison of their basic performance parameters. Application performance is presented for multiple problem sizes and the relative performance on the selected machines is explained through micro-benchmarking results. We hope that insights from this work will be useful to managers making buying decisions for supercomputers and application users trying to decide on a machine to run on. Based on the performance analysis techniques used in the paper, we also suggest a step-by-step procedure for estimating the suitability of a given architecture for a highly parallel application.
AB - The emergence of new parallel architectures presents new challenges for application developers. Supercomputers vary in processor speed, network topology, interconnect communication characteristics and memory subsystems. This paper presents a performance comparison of three of the fastest machines in the world: IBM's Blue Gene/P installation at ANL (Intrepid), the SUN-Infiniband cluster at TACC (Ranger) and Cray's XT4 installation at ORNL (Jaguar). Comparisons are based on three applications selected by NSF for the Track 1 proposal to benchmark the Blue Waters system: NAMD, MILC and a turbulence code, DNS. We present a comprehensive overview of the architectural details of each of these machines and a comparison of their basic performance parameters. Application performance is presented for multiple problem sizes and the relative performance on the selected machines is explained through micro-benchmarking results. We hope that insights from this work will be useful to managers making buying decisions for supercomputers and application users trying to decide on a machine to run on. Based on the performance analysis techniques used in the paper, we also suggest a step-by-step procedure for estimating the suitability of a given architecture for a highly parallel application.
KW - architecture
KW - micro-benchmarking
KW - performance analysis
KW - scientific applications
KW - supercomputers
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U2 - 10.1177/1094342010370603
DO - 10.1177/1094342010370603
M3 - Article
AN - SCOPUS:78649506953
SN - 1094-3420
VL - 24
SP - 411
EP - 427
JO - International Journal of High Performance Computing Applications
JF - International Journal of High Performance Computing Applications
IS - 4
ER -