Transient-mediated fate determination in a transcriptional circuit of HIV

Leor S. Weinberger, Roy David Dar, Michael L. Simpson

Research output: Contribution to journalArticle

Abstract

Steady-state behavior and bistability have been proposed as mechanisms for decision making in gene circuits. However, transient gene expression has also been proposed to control cell fate, with the decision arbitrated by the duration of a transient gene expression pulse. Here, using an HIV-1 model system, we directly quantify transcriptional feedback strength and its effects on both the duration of HIV-1 Tat transcriptional pulses and the fate of HIV-infected cells. By measuring shifts in the autocorrelation of noise inherent to gene expression, we found that transcriptional positive feedback extends the single-cell Tat expression lifetime two- to sixfold for both minimal Tat circuits and full length, actively replicating HIV-1. Notably, artificial weakening of Tat positive feedback shortened the duration of Tat expression transients and biased the probability in favor of latency. Thus, transcriptional positive feedback can modulate transient expression lifetime to a greater extent than protein half-life modulation, and it has a critical role in the cell-fate decision in HIV.

Original languageEnglish (US)
Pages (from-to)466-470
Number of pages5
JournalNature Genetics
Volume40
Issue number4
DOIs
StatePublished - Apr 1 2008
Externally publishedYes

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HIV
HIV-1
Gene Expression
Gene Regulatory Networks
Half-Life
Noise
Decision Making
Proteins

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

Cite this

Transient-mediated fate determination in a transcriptional circuit of HIV. / Weinberger, Leor S.; Dar, Roy David; Simpson, Michael L.

In: Nature Genetics, Vol. 40, No. 4, 01.04.2008, p. 466-470.

Research output: Contribution to journalArticle

Weinberger, Leor S. ; Dar, Roy David ; Simpson, Michael L. / Transient-mediated fate determination in a transcriptional circuit of HIV. In: Nature Genetics. 2008 ; Vol. 40, No. 4. pp. 466-470.
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