Towards an evolutionary model of animal-associated microbiomes

Carl J. Yeoman, Nicholas Chia, Suleyman Yildirim, Margret E. Berg Miller, Angela Kent, Rebecca Stumpf, Steven R. Leigh, Karen E. Nelson, Bryan A. White, Brenda A. Wilson

Research output: Contribution to journalReview article

Abstract

Second-generation sequencing technologies have granted us greater access to the diversity and genetics of microbial communities that naturally reside endo- and ecto-symbiotically with animal hosts. Substantial research has emerged describing the diversity and broader trends that exist within and between host species and their associated microbial ecosystems, yet the application of these data to our evolutionary understanding of microbiomes appears fragmented. For the most part biological perspectives are based on limited observations of oversimplified communities, while mathematical and/or computational modeling of these concepts often lack biological precedence. In recognition of this disconnect, both fields have attempted to incorporate ecological theories, although their applicability is currently a subject of debate because most ecological theories were developed based on observations of macro-organisms and their ecosystems. For the purposes of this review, we attempt to transcend the biological, ecological and computational realms, drawing on extensive literature, to forge a useful framework that can, at a minimum be built upon, but ideally will shape the hypotheses of each field as they move forward. In evaluating the top-down selection pressures that are exerted on a microbiome we find cause to warrant reconsideration of the much-maligned theory of multi-level selection and reason that complexity must be underscored by modularity.

Original languageEnglish (US)
Pages (from-to)570-594
Number of pages25
JournalEntropy
Volume13
Issue number3
DOIs
StatePublished - Mar 1 2011

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ecosystems
animals
modularity
sequencing
organisms
trends
causes

Keywords

  • Animal
  • Complexity
  • Ecology
  • Evolution
  • Interdependency
  • Microbiome
  • Modularity
  • Multi-level selection

ASJC Scopus subject areas

  • Physics and Astronomy(all)

Cite this

Towards an evolutionary model of animal-associated microbiomes. / Yeoman, Carl J.; Chia, Nicholas; Yildirim, Suleyman; Berg Miller, Margret E.; Kent, Angela; Stumpf, Rebecca; Leigh, Steven R.; Nelson, Karen E.; White, Bryan A.; Wilson, Brenda A.

In: Entropy, Vol. 13, No. 3, 01.03.2011, p. 570-594.

Research output: Contribution to journalReview article

Yeoman, CJ, Chia, N, Yildirim, S, Berg Miller, ME, Kent, A, Stumpf, R, Leigh, SR, Nelson, KE, White, BA & Wilson, BA 2011, 'Towards an evolutionary model of animal-associated microbiomes', Entropy, vol. 13, no. 3, pp. 570-594. https://doi.org/10.3390/e13030570
Yeoman CJ, Chia N, Yildirim S, Berg Miller ME, Kent A, Stumpf R et al. Towards an evolutionary model of animal-associated microbiomes. Entropy. 2011 Mar 1;13(3):570-594. https://doi.org/10.3390/e13030570
Yeoman, Carl J. ; Chia, Nicholas ; Yildirim, Suleyman ; Berg Miller, Margret E. ; Kent, Angela ; Stumpf, Rebecca ; Leigh, Steven R. ; Nelson, Karen E. ; White, Bryan A. ; Wilson, Brenda A. / Towards an evolutionary model of animal-associated microbiomes. In: Entropy. 2011 ; Vol. 13, No. 3. pp. 570-594.
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