TY - JOUR
T1 - Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada
AU - Zhou, Xin
AU - Adamowicz, Sarah J.
AU - Jacobus, Luke M.
AU - Dewalt, R. Edward
AU - Hebert, Paul Dn
N1 - Funding Information:
We dedicate this paper to Dr. Rob Roughley (University of Manitoba), who recently passed away. A beetle specialist, he was also a major partner in the overall insect biodiversity survey of Churchill, and he contributed important EPT specimens to the present work. Colleagues at the Biodiversity Institute of Ontario provided critical assistance in field collecting and in conducting the DNA sequencing work. We thank Dr. David Orme (Imperial College London) for advice in developing the PD randomization method. We are also grateful to Drs. Roger Blahnik (University of Minnesota), John Morse (Clemson University), and W. Patrick McCafferty (Pur-due University) for their important taxonomic advice. This work was supported by a Natural Sciences and Engineering Research Council of Canada (NSERC) International Polar Year (IPY) grant and by grants from Genome Canada through the Ontario Genomics Institute to PDNH.
PY - 2009
Y1 - 2009
N2 - Background. This study reports progress in assembling a DNA barcode reference library for Ephemeroptera, Plecoptera, and Trichoptera ("EPTs") from a Canadian subarctic site, which is the focus of a comprehensive biodiversity inventory using DNA barcoding. These three groups of aquatic insects exhibit a moderate level of species diversity, making them ideal for testing the feasibility of DNA barcoding for routine biotic surveys. We explore the correlation between the morphological species delineations, DNA barcode-based haplotype clusters delimited by a sequence threshold (2%), and a threshold-free approach to biodiversity quantification - phylogenetic diversity. Results. A DNA barcode reference library is built for 112 EPT species for the focal region, consisting of 2277 COI sequences. Close correspondence was found between EPT morphospecies and haplotype clusters as designated using a standard threshold value. Similarly, the shapes of taxon accumulation curves based upon haplotype clusters were very similar to those generated using phylogenetic diversity accumulation curves, but were much more computationally efficient. Conclusion. The results of this study will facilitate other lines of research on northern EPTs and also bode well for rapidly conducting initial biodiversity assessments in unknown EPT faunas.
AB - Background. This study reports progress in assembling a DNA barcode reference library for Ephemeroptera, Plecoptera, and Trichoptera ("EPTs") from a Canadian subarctic site, which is the focus of a comprehensive biodiversity inventory using DNA barcoding. These three groups of aquatic insects exhibit a moderate level of species diversity, making them ideal for testing the feasibility of DNA barcoding for routine biotic surveys. We explore the correlation between the morphological species delineations, DNA barcode-based haplotype clusters delimited by a sequence threshold (2%), and a threshold-free approach to biodiversity quantification - phylogenetic diversity. Results. A DNA barcode reference library is built for 112 EPT species for the focal region, consisting of 2277 COI sequences. Close correspondence was found between EPT morphospecies and haplotype clusters as designated using a standard threshold value. Similarly, the shapes of taxon accumulation curves based upon haplotype clusters were very similar to those generated using phylogenetic diversity accumulation curves, but were much more computationally efficient. Conclusion. The results of this study will facilitate other lines of research on northern EPTs and also bode well for rapidly conducting initial biodiversity assessments in unknown EPT faunas.
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U2 - 10.1186/1742-9994-6-30
DO - 10.1186/1742-9994-6-30
M3 - Article
C2 - 20003245
AN - SCOPUS:74849128562
SN - 1742-9994
VL - 6
JO - Frontiers in Zoology
JF - Frontiers in Zoology
IS - 1
M1 - 30
ER -