The semiquinone at the Qisite of the bc 1complex explored using HYSCORE spectroscopy and specific isotopic labeling of ubiquinone in rhodobacter sphaeroides via 13c methionine and construction of a methionine auxotroph

Sangjin Hong, Wagner B. De Almeida, Alexander T. Taguchi, Rimma I. Samoilova, Robert B Gennis, Patrick J. O'Malley, Sergei Dikanov, Antony R. Crofts

Research output: Contribution to journalArticle

Abstract

Specific isotopic labeling at the residue or substituent level extends the scope of different spectroscopic approaches to the atomistic level. Here we describe 13C isotopic labeling of the methyl and methoxy ring substituents of ubiquinone, achieved through construction of a methionine auxotroph in Rhodobacter sphaeroides strain BC17 supplemented with l-methionine with the side chain methyl group 13C-labeled. Two-dimensional electron spin echo envelope modulation (HYSCORE) was applied to study the 13C methyl and methoxy hyperfine couplings in the semiquinone generated in situ at the Qisite of the bc1complex in its membrane environment. The data were used to characterize the distribution of unpaired spin density and the conformations of the methoxy substituents based on density functional theory calculations of 13C hyperfine tensors in the semiquinone of the geometry-optimized X-ray structure of the bc1complex (Protein Data Bank entry 1PP9) with the highest available resolution. Comparison with other proteins indicates individual orientations of the methoxy groups in each particular case are always different from the methoxy conformations in the anion radical prepared in a frozen alcohol solution. The protocol used in the generation of the methionine auxotroph is more generally applicable and, because it introduces a gene deletion using a suicide plasmid, can be applied repeatedly.

Original languageEnglish (US)
Pages (from-to)6022-6031
Number of pages10
JournalBiochemistry
Volume53
Issue number38
DOIs
StatePublished - Sep 30 2014

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Rhodobacter sphaeroides
Ubiquinone
Methionine
Labeling
Spectrum Analysis
Spectroscopy
Conformations
Gene Deletion
Suicide
Density functional theory
Tensors
Anions
Proteins
Plasmids
Genes
Alcohols
Modulation
X-Rays
Databases
Electrons

ASJC Scopus subject areas

  • Biochemistry

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The semiquinone at the Qisite of the bc 1complex explored using HYSCORE spectroscopy and specific isotopic labeling of ubiquinone in rhodobacter sphaeroides via 13c methionine and construction of a methionine auxotroph. / Hong, Sangjin; De Almeida, Wagner B.; Taguchi, Alexander T.; Samoilova, Rimma I.; Gennis, Robert B; O'Malley, Patrick J.; Dikanov, Sergei; Crofts, Antony R.

In: Biochemistry, Vol. 53, No. 38, 30.09.2014, p. 6022-6031.

Research output: Contribution to journalArticle

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