The Giardia genome project database

Andrew G. McArthur, Hilary G. Morrison, Julie E.J. Nixon, Nora Q.E. Passamaneck, Ulandt Kim, Gregory Hinkle, Melissa K. Crocker, Michael E. Holder, Rebecca Farr, Claudia I. Reich, Gary E. Olsen, Stephen B. Aley, Rodney D. Adam, Frances D. Gillin, Mitchell L. Sogin

Research output: Contribution to journalArticle

Abstract

The Giardia genome project database provides an online resource for Giardia lamblia (WB strain, clone C6) genome sequence information. The database includes edited single-pass reads, the results of BLASTX searches, and details of progress towards sequencing the entire 12 million-bp Giardia genome. Pre-sorted BLASTX results can be retrieved based on keyword searches and BLAST searches of the high throughput Giardia data can be initiated from the web site or through NCBI. Descriptions of the genomic DNA libraries, project protocols and summary statistics are also available. Although the Giardia genome project is ongoing, new sequences are made available on a bi- monthly basis to ensure that researchers have access to information that may assist them in the search for genes and their biological function. The current URL of the Giardia genome project database is www.mbl.edu/Giardia. (C) 2000 Federation of European Microbiological Societies.

Original languageEnglish (US)
Pages (from-to)271-273
Number of pages3
JournalFEMS microbiology letters
Volume189
Issue number2
DOIs
StatePublished - Aug 15 2000

    Fingerprint

Keywords

  • BLAST
  • Genome database
  • Genome sequencing
  • Giardia lamblia

ASJC Scopus subject areas

  • Microbiology
  • Molecular Biology
  • Genetics

Cite this

McArthur, A. G., Morrison, H. G., Nixon, J. E. J., Passamaneck, N. Q. E., Kim, U., Hinkle, G., Crocker, M. K., Holder, M. E., Farr, R., Reich, C. I., Olsen, G. E., Aley, S. B., Adam, R. D., Gillin, F. D., & Sogin, M. L. (2000). The Giardia genome project database. FEMS microbiology letters, 189(2), 271-273. https://doi.org/10.1016/S0378-1097(00)00299-8