TY - JOUR
T1 - Surface model and tomographic archive of fossil primate and other mammal holotype and paratype specimens of the ditsong national museum of natural History, Pretoria, South Africa
AU - Adams, Justin W.
AU - Olah, Angela
AU - McCurry, Matthew R.
AU - Potze, Stephany
AU - Wilson, Brenda A.
N1 - The list of specimens curated in the DNMNH Plio-Pleistocene vault and available through our digital archive as polygonal mesh surfaces (PLY, STL, VRML) and/or tomographic dataset is presented in (with representative screenshots provided in ). In lieu of redescribing this wide range of specimens within this publication or in , we have instead provided the primary (and secondary) references to the previously published original/expanded specimen and taxonomic descriptions as a resource for guiding use of the offered data. Our archive of digital data (consisting of a screenshot of the textured polygonal mesh, each version of the surface mesh, and any available tomographic data) are openly available for researchers and can be accessed through two different paths. First, all STL, PLY and tomographic data has been uploaded to the MorphoSource platform ( http://www.morphosource.org ; DOI for all files provided in ) as a project administered by two of the current authors (JWA, SP) and can be requested through the MorphoSource website as direct download. Second, screenshots and details of the archive project, along with direct email links to request digital data download permission of all file types (STL, PLY, VRML, CT, microCT), are provided through our research group website ( http://www.sapalaeo.com/dnmnh-archive ). Independent of the origin of the request, researchers are required to complete a digital data agreement form (including a brief research proposal) directly to the curator of the Plio-Pleistocene Section (Stephany Potze: [email protected] ; [email protected] [preferred]; digital data agreement form available via email or at http://www.sapalaeo.com/dnmnh-archive ). This policy of documenting specimen use is consistent with current on-site and digital fossil access protocols of the DNMNH Plio-Pleistocene Palaeontology Section, ensures adherence to the guidelines for acceptable use of the specimens (e.g., strictly non-commercial, research and educational purposes only), and allows the Museum to retain records of specimen use across research projects essential for complying with South African government Acts governing the use of curated heritage objects. Researchers who make use of this surface and tomographic archive are also asked to cite this publication as the source of the digital data, which serves to both acknowledge the personal and institutional resources underlying the project and allows the Plio-Pleistocene Palaeontology Section to monitor the use and publication of their collections. Researchers making use of the microCT data generated from the Nuclear Energy Corporation of South Africa (Necsa) are asked to acknowledge in publication: ‘MicroCT data from the Necsa MIXRAD facility was generated using a Nikon XTH 225 ST micro-focus X-ray tomography system funded by the Department of Science and Technology and National Research Foundation.’
PY - 2015/10/6
Y1 - 2015/10/6
N2 - Nearly a century of paleontological excavation and analysis from the cave deposits of the Cradle of Humankind UNESCO World Heritage Site in northeastern South Africa underlies much of our understanding of the evolutionary history of hominins, other primates and other mammal lineages in the late Pliocene and early Pleistocene of Africa. As one of few designated fossil repositories, the Plio-Pleistocene Palaeontology Section of the Ditsong National Museum of Natural History (DNMNH; the former Transvaal Museum) curates much of the mammalian faunas recovered from the fossil-rich deposits of major South African hominin-bearing localities, including the holotype and paratype specimens of many primate, carnivore, and other mammal species (Orders Primates, Carnivora, Artiodactyla, Eulipotyphla, Hyracoidea, Lagomorpha, Perissodactyla, and Proboscidea). Here we describe an open-access digital archive of high-resolution, full-color three-dimensional (3D) surface meshes of all 89 non-hominin holotype, paratype and significant mammalian specimens curated in the Plio-Pleistocene Section vault. Surface meshes were generated using a commercial surface scanner (Artec Spider, Artec Group, Luxembourg), are provided in formats that can be opened in both open-source and commercial software, and can be readily downloaded either via an online data repository (MorphoSource) or via direct request from the DNMNH. In addition to providing surface meshes for each specimen, we also provide tomographic data (both computerized tomography [CT] and microfocus [microCT]) for a subset of these fossil specimens. This archive of the DNMNH Plio-Pleistocene collections represents the first research-quality 3D datasets of African mammal fossils to be made openly available. This simultaneously provides the paleontological community with essential baseline information (e.g., updated listing and 3D record of specimens in their current state of preservation) and serves as a single resource of high-resolution digital data that improves collections accessibility, reduces unnecessary duplication of efforts by researchers, and encourages ongoing imaging-based paleobiological research across a range of South African non-hominin fossil faunas. Because the types, paratypes, and key specimens include globally-distributed mammal taxa, this digital archive not only provides 3D morphological data on taxa fundamental to Neogene and Quaternary South African palaeontology, but also lineages critical to research on African, other Old World, and New World paleocommunities. With such a broader impact of the DNMNH 3D data, we hope that establishing open access to this digital archive will encourage other researchers and institutions to provide similar resources that increase accessibility to paleontological collections and support advanced paleobiological analyses.
AB - Nearly a century of paleontological excavation and analysis from the cave deposits of the Cradle of Humankind UNESCO World Heritage Site in northeastern South Africa underlies much of our understanding of the evolutionary history of hominins, other primates and other mammal lineages in the late Pliocene and early Pleistocene of Africa. As one of few designated fossil repositories, the Plio-Pleistocene Palaeontology Section of the Ditsong National Museum of Natural History (DNMNH; the former Transvaal Museum) curates much of the mammalian faunas recovered from the fossil-rich deposits of major South African hominin-bearing localities, including the holotype and paratype specimens of many primate, carnivore, and other mammal species (Orders Primates, Carnivora, Artiodactyla, Eulipotyphla, Hyracoidea, Lagomorpha, Perissodactyla, and Proboscidea). Here we describe an open-access digital archive of high-resolution, full-color three-dimensional (3D) surface meshes of all 89 non-hominin holotype, paratype and significant mammalian specimens curated in the Plio-Pleistocene Section vault. Surface meshes were generated using a commercial surface scanner (Artec Spider, Artec Group, Luxembourg), are provided in formats that can be opened in both open-source and commercial software, and can be readily downloaded either via an online data repository (MorphoSource) or via direct request from the DNMNH. In addition to providing surface meshes for each specimen, we also provide tomographic data (both computerized tomography [CT] and microfocus [microCT]) for a subset of these fossil specimens. This archive of the DNMNH Plio-Pleistocene collections represents the first research-quality 3D datasets of African mammal fossils to be made openly available. This simultaneously provides the paleontological community with essential baseline information (e.g., updated listing and 3D record of specimens in their current state of preservation) and serves as a single resource of high-resolution digital data that improves collections accessibility, reduces unnecessary duplication of efforts by researchers, and encourages ongoing imaging-based paleobiological research across a range of South African non-hominin fossil faunas. Because the types, paratypes, and key specimens include globally-distributed mammal taxa, this digital archive not only provides 3D morphological data on taxa fundamental to Neogene and Quaternary South African palaeontology, but also lineages critical to research on African, other Old World, and New World paleocommunities. With such a broader impact of the DNMNH 3D data, we hope that establishing open access to this digital archive will encourage other researchers and institutions to provide similar resources that increase accessibility to paleontological collections and support advanced paleobiological analyses.
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U2 - 10.1371/journal.pone.0139800
DO - 10.1371/journal.pone.0139800
M3 - Article
C2 - 26441324
AN - SCOPUS:84947740343
SN - 1932-6203
VL - 10
JO - PloS one
JF - PloS one
IS - 10
M1 - e139800
ER -