Structure-function correlations derived from faster variants of a RNA ligase deoxyribozyme

Tracey K. Prior, Daniel R. Semlow, Amber Flynn-Charlebois, Imran Rashid, Scott K Silverman

Research output: Contribution to journalArticle

Abstract

We previously reported the in vitro selection of several Mg2+-dependent deoxyribozymes (DNA enzymes) that synthesize a 2′-5′ RNA linkage from a 2′,3′-cyclic phosphate and a 5′-hydroxyl. Here we subjected the 9A2 deoxyribozyme to re-selection for improved ligation rate. We found two new DNA enzymes (7Z81 and 7Z48) that contain the catalytic core of 7Q10, a previously reported small deoxyribozyme that is unrelated in sequence to 9A2. A third new DNA enzyme (7Z101) is unrelated to either 7Q10 or 9A2. The new 7Z81 and 7Z48 DNA enzymes have ligation rates over an order of magnitude higher than that of 7Q10 itself and they have additional sequence elements that correlate with these faster rates. Our findings provide insight into structure-function relationships of catalytic nucleic acids.

Original languageEnglish (US)
Pages (from-to)1075-1082
Number of pages8
JournalNucleic acids research
Volume32
Issue number3
DOIs
StatePublished - Jul 14 2004

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Catalytic DNA
Ligases
RNA
DNA
Enzymes
Ligation
Hydroxyl Radical
Nucleic Acids
Catalytic Domain
Phosphates

ASJC Scopus subject areas

  • Genetics

Cite this

Structure-function correlations derived from faster variants of a RNA ligase deoxyribozyme. / Prior, Tracey K.; Semlow, Daniel R.; Flynn-Charlebois, Amber; Rashid, Imran; Silverman, Scott K.

In: Nucleic acids research, Vol. 32, No. 3, 14.07.2004, p. 1075-1082.

Research output: Contribution to journalArticle

Prior, Tracey K. ; Semlow, Daniel R. ; Flynn-Charlebois, Amber ; Rashid, Imran ; Silverman, Scott K. / Structure-function correlations derived from faster variants of a RNA ligase deoxyribozyme. In: Nucleic acids research. 2004 ; Vol. 32, No. 3. pp. 1075-1082.
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