TY - JOUR
T1 - Splicing variants of the porcine betaine-homocysteine S-methyltransferase gene
T2 - Implications for mammalian metabolism
AU - Ganu, Radhika
AU - Garrow, Timothy
AU - Koutmos, Markos
AU - Rund, Laurie
AU - Schook, Lawrence B.
N1 - Funding Information:
This work was supported by USDA AG 2008-34480-19328 and USDA- ARS 538 AG58-5438-7-317l to LBS, and NIH grant RO1 DK52501 to TAG. The funding agencies were not involved in the preparation of the manuscript. We thank the staff at W.M. Keck Center for Comparative and Functional Genomics at UIUC for their help in sequencing and real-time RT-PCR.
PY - 2013/10/25
Y1 - 2013/10/25
N2 - Betaine-homocysteine S-methyltransferase (BHMT) activity is only detected in the liver of rodents, but in both the liver and kidney cortex of humans and pigs; therefore, the pig was chosen as a model to define the spatial and temporal expression of BHMT during development. During fetal development, a total of ten splice variants of bhmt were expressed at varying levels across a wide range of porcine tissues. Two variants contained an identical ORF that encoded a C-terminal truncated form of BHMT (tBHMT). The bhmt transcripts were expressed at significant levels in the liver and kidney from day 45 of gestation (G45) onward. The transcripts encoding tBHMT represented 5-13% of the total bhmt transcripts in G30 fetus, G45 liver, and adult liver and kidney cortex. The dominant structural feature of wild type BHMT is an (βα)8 barrel, however, a modeled structure of tBHMT suggests that this protein would assume a horseshoe fold and lack methyltransferase activity. Low BHMT activity was detected in the G30 fetus, and slightly increased levels of activity were observed in the liver from G45 and G90 fetuses. The bhmt promoter contained three key CpG sites, and methylation of these sites was significantly higher in adult lung compared to adult liver. The data reported herein suggest that genomic DNA methylation and variation of the 5' and 3' UTRs of bhmt transcripts are key regulators for the level of BHMT transcription and translation.
AB - Betaine-homocysteine S-methyltransferase (BHMT) activity is only detected in the liver of rodents, but in both the liver and kidney cortex of humans and pigs; therefore, the pig was chosen as a model to define the spatial and temporal expression of BHMT during development. During fetal development, a total of ten splice variants of bhmt were expressed at varying levels across a wide range of porcine tissues. Two variants contained an identical ORF that encoded a C-terminal truncated form of BHMT (tBHMT). The bhmt transcripts were expressed at significant levels in the liver and kidney from day 45 of gestation (G45) onward. The transcripts encoding tBHMT represented 5-13% of the total bhmt transcripts in G30 fetus, G45 liver, and adult liver and kidney cortex. The dominant structural feature of wild type BHMT is an (βα)8 barrel, however, a modeled structure of tBHMT suggests that this protein would assume a horseshoe fold and lack methyltransferase activity. Low BHMT activity was detected in the G30 fetus, and slightly increased levels of activity were observed in the liver from G45 and G90 fetuses. The bhmt promoter contained three key CpG sites, and methylation of these sites was significantly higher in adult lung compared to adult liver. The data reported herein suggest that genomic DNA methylation and variation of the 5' and 3' UTRs of bhmt transcripts are key regulators for the level of BHMT transcription and translation.
KW - Betaine
KW - Bisulfite sequencing
KW - Homocysteine
KW - Splice variant
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U2 - 10.1016/j.gene.2013.07.103
DO - 10.1016/j.gene.2013.07.103
M3 - Article
C2 - 23948084
AN - SCOPUS:84883761852
SN - 0378-1119
VL - 529
SP - 228
EP - 237
JO - Gene
JF - Gene
IS - 2
ER -