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Recent progress on methods for estimating and updating large phylogenies
Paul Zaharias,
Tandy Warnow
Siebel School of Computing and Data Science
Mathematics
Statistics
Coordinated Science Lab
Unit for Criticism and Interpretive Theory
Evolution, Ecology, and Behavior
Entomology
National Center for Supercomputing Applications (NCSA)
Carl R. Woese Institute for Genomic Biology
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Keyphrases
Phylogeny Estimation
100%
Deep Phylogeny
100%
Species Tree
100%
Sequence Data
50%
Phylogeny
50%
Highly Accurate
50%
Recent Advances
50%
Estimation Method
50%
Multiple Sequence Alignment
50%
Divide-and-conquer
50%
Computational Challenges
50%
Biological Processes
50%
Biologists
50%
Sequenced Genomes
50%
Incomplete Lineage Sorting
50%
Multilocus Approach
50%
Gene Tree
50%
Large Trees
50%
Gene Duplication
50%
Gene Loss
50%
Lineage Genes
50%
Analytical Challenges
50%
Long Genes
50%
Microbial Pathogens
50%
Assembled Genomes
50%
Genomic Population Structure
50%
Complex pipeline
50%
Genome Phylogeny
50%
Immunology and Microbiology
Cladistics
100%
Infectious Agent
50%
Lineages
50%
Sequence Alignment
50%
Biological Phenomena and Functions Concerning the Entire Organism
50%
Gene Loss
50%
Gene Duplication
50%
Population Structure
50%
Biochemistry, Genetics and Molecular Biology
Cladistics
100%
Infectious Agent
50%
Sequence Alignment
50%
Biological Phenomena and Functions Concerning the Entire Organism
50%
Gene Duplication
50%
Gene Loss
50%
Population Structure
50%
Genomics
50%
Agricultural and Biological Sciences
Cladistics
100%
Sequence Alignment
50%
Lineages
50%
Gene Duplication
50%
Biologists
50%
Population Structure
50%