Protein folding and chart parsing

Julia Hockenmaier, Aravind K. Joshi, Ken A. Dill

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

How can proteins fold so quickly into their unique native structures? We show here that there is a natural analogy between parsing and the protein folding problem, and demonstrate that CKY can find the native structures of a simplified lattice model of proteins with high accuracy.

Original languageEnglish (US)
Title of host publicationCOLING/ACL 2006 - EMNLP 2006
Subtitle of host publication2006 Conference on Empirical Methods in Natural Language Processing, Proceedings of the Conference
PublisherAssociation for Computational Linguistics (ACL)
Pages293-300
Number of pages8
ISBN (Print)1932432736, 9781932432732
DOIs
StatePublished - 2006
Externally publishedYes
Event11th Conference on Empirical Methods in Natural Language Proceessing, EMNLP 2006, Held in Conjunction with COLING/ACL 2006 - Sydney, NSW, Australia
Duration: Jul 22 2006Jul 23 2006

Publication series

NameCOLING/ACL 2006 - EMNLP 2006: 2006 Conference on Empirical Methods in Natural Language Processing, Proceedings of the Conference

Other

Other11th Conference on Empirical Methods in Natural Language Proceessing, EMNLP 2006, Held in Conjunction with COLING/ACL 2006
Country/TerritoryAustralia
CitySydney, NSW
Period7/22/067/23/06

ASJC Scopus subject areas

  • Information Systems
  • Computational Theory and Mathematics
  • Computer Science Applications

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