Physico-chemical model for DNA alkaline elution: New experimental evidence and differential role of DNA length, chain flexibility and superpacking

C. Nicolini, A. Belmont, S. Zietz, A. Maura, A. Ping, L. Robbiano, G. Brambilla

Research output: Contribution to journalArticlepeer-review

Abstract

For a better understanding of data provided by DNA alkaline elution technique, a new analytical model has been developed which takes into consideration both the physicochemical properties of in situ DNA strand (length and flexibility/superpacking) and the geometric and hydrodynamic configuration of the elution apparatus (flow and filter conditions). Simulation by this model of experimental data previously obtained before and after carcinogens administration, has shown that for constant flow and filter conditions elution profiles are dependent, not only from DNA molecular weight, but also from a parameter critically related to modifications in chain flexibility/superpacking. This has been confirmed by several independent observations, including the time-dependent changes in non-denaturing lysing solution monitored by hydroxylapatite and alkaline elution techniques.

Original languageEnglish (US)
Pages (from-to)341-357
Number of pages17
JournalJournal of Theoretical Biology
Volume100
Issue number2
DOIs
StatePublished - Jan 21 1983
Externally publishedYes

ASJC Scopus subject areas

  • Statistics and Probability
  • Modeling and Simulation
  • General Biochemistry, Genetics and Molecular Biology
  • General Immunology and Microbiology
  • General Agricultural and Biological Sciences
  • Applied Mathematics

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