TY - JOUR
T1 - Phylogenomics of the family Lachesillidae (Insecta: Psocodea: Psocomorpha)
AU - Saenz Manchola, Oscar Fernando
AU - Virrueta Herrera, Stephany
AU - D'Alessio, Lorenzo Mario
AU - García Aldrete, Alfonso Neri
AU - Johnson, Kevin P.
N1 - We thank Alvaro Hernandez, Chris Wright and the Roy J. Carver Biotechnology Centre at the University of Illinois for assistance with Illumina sequencing. We thank Kim Walden for assistance in submission of sequence files to NCBI. We thank R. de Moya, E. L. Mockford, T. Muroi and D. Percy for assistance in obtaining specimens for this study. We thank Rachel Skinner for assistance in scripts preparation and execution. We thank Jorge Doña for help with some phylogenetic analyses run on the Alhambra Cluster. This work is in part product of the Ph.D. thesis presented by OSFM. OFSM thank Posgrado en Ciencias Biológicas (PCB) UNAM, for continuous support during his studies. ANGA and OFSM thank Instituto de Biología, UNAM, for continuous research support.
PY - 2023/4
Y1 - 2023/4
N2 - Lachesillidae is one of the largest families of bark lice and includes more than 420 described species, in 26 genera and three subfamilies. This family belongs in the suborder Psocomorpha, infraorder Homilopsocidea. The classification of Lachesillidae is based on male and female genital morphologies, but questions remain regarding the monophyly of the family and some of its genera. Here, we used whole genome and transcriptome data to generate a 2060 orthologous gene data matrix of 2,438,763 aligned bp and used these data to reconstruct the phylogenetic relationships of species of Lachesillidae and relatives. Taxon sampling included 24 species from Lachesillidae and 23 additional species belonging to related families from the infraorders Homilopsocidea and Caeciliusetae. Phylogenetic relationships reconstructed with maximum likelihood and coalescent-based analyses indicated paraphyly of Lachesillidae, and monophyly of the tribe Graphocaeciliini and the genus Lachesilla were also never recovered. Instability was observed in the position of Eolachesilla chilensis, which was recovered either as sister to Elipsocidae or to Mesopsocidae species, so we cannot conclusively determine the position of this genus within the Homilopsocidea. Given our results, a reclassification is necessary, but more taxon sampling of other species in Mesopsocidae and Peripsocidae would be useful to add to a tree in future before proposing a new classification.
AB - Lachesillidae is one of the largest families of bark lice and includes more than 420 described species, in 26 genera and three subfamilies. This family belongs in the suborder Psocomorpha, infraorder Homilopsocidea. The classification of Lachesillidae is based on male and female genital morphologies, but questions remain regarding the monophyly of the family and some of its genera. Here, we used whole genome and transcriptome data to generate a 2060 orthologous gene data matrix of 2,438,763 aligned bp and used these data to reconstruct the phylogenetic relationships of species of Lachesillidae and relatives. Taxon sampling included 24 species from Lachesillidae and 23 additional species belonging to related families from the infraorders Homilopsocidea and Caeciliusetae. Phylogenetic relationships reconstructed with maximum likelihood and coalescent-based analyses indicated paraphyly of Lachesillidae, and monophyly of the tribe Graphocaeciliini and the genus Lachesilla were also never recovered. Instability was observed in the position of Eolachesilla chilensis, which was recovered either as sister to Elipsocidae or to Mesopsocidae species, so we cannot conclusively determine the position of this genus within the Homilopsocidea. Given our results, a reclassification is necessary, but more taxon sampling of other species in Mesopsocidae and Peripsocidae would be useful to add to a tree in future before proposing a new classification.
KW - INHS
KW - Graphocaeciliini
KW - Lachesilla
KW - genomics
KW - Eo. chilensis
KW - phylogenetic relationships
UR - http://www.scopus.com/inward/record.url?scp=85142164182&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85142164182&partnerID=8YFLogxK
U2 - 10.1111/syen.12577
DO - 10.1111/syen.12577
M3 - Article
SN - 1365-3113
VL - 48
SP - 316
EP - 327
JO - Systematic Entomology
JF - Systematic Entomology
IS - 2
ER -