TY - GEN
T1 - Multimodal Fusion of Imaging and Genomics for Lung Cancer Recurrence Prediction
AU - Subramanian, Vaishnavi
AU - Do, Minh N.
AU - Syeda-Mahmood, Tanveer
N1 - Publisher Copyright:
© 2020 IEEE.
PY - 2020/4
Y1 - 2020/4
N2 - Lung cancer has a high rate of recurrence in early-stage patients. Predicting the post-surgical recurrence in lung cancer patients has traditionally been approached using single modality information of genomics or radiology images. We investigate the potential of multimodal fusion for this task. By combining computed tomography (CT) images and genomics, we demonstrate improved prediction of recurrence using linear Cox proportional hazards models with elastic net regularization. We work on a recent non-small cell lung cancer (NSCLC) radiogenomics dataset of 130 patients and observe an increase in concordance-index values of up to 10%. Employing non-linear methods from the neural network literature, such as multi -layer perceptrons and visual-question answering fusion modules, did not improve performance consistently. This indicates the need for larger multimodal datasets and fusion techniques better adapted to this biological setting.
AB - Lung cancer has a high rate of recurrence in early-stage patients. Predicting the post-surgical recurrence in lung cancer patients has traditionally been approached using single modality information of genomics or radiology images. We investigate the potential of multimodal fusion for this task. By combining computed tomography (CT) images and genomics, we demonstrate improved prediction of recurrence using linear Cox proportional hazards models with elastic net regularization. We work on a recent non-small cell lung cancer (NSCLC) radiogenomics dataset of 130 patients and observe an increase in concordance-index values of up to 10%. Employing non-linear methods from the neural network literature, such as multi -layer perceptrons and visual-question answering fusion modules, did not improve performance consistently. This indicates the need for larger multimodal datasets and fusion techniques better adapted to this biological setting.
UR - http://www.scopus.com/inward/record.url?scp=85085866979&partnerID=8YFLogxK
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U2 - 10.1109/ISBI45749.2020.9098545
DO - 10.1109/ISBI45749.2020.9098545
M3 - Conference contribution
AN - SCOPUS:85085866979
T3 - Proceedings - International Symposium on Biomedical Imaging
SP - 804
EP - 808
BT - ISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging
PB - IEEE Computer Society
T2 - 17th IEEE International Symposium on Biomedical Imaging, ISBI 2020
Y2 - 3 April 2020 through 7 April 2020
ER -