MRNA quantification via second harmonic super resolution microscopy

Jing Liu, Il Hoon Cho, Ulhas Kadam, Joseph Irudayaraj

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Cell-specific information on quantity and localization of key mRNA transcripts in single-cell level are critical to the assessment of cancer risk, therapy efficacy, and effective prevention strategies. However, most available technologies for mRNA detection rely on cell extraction that inherently destroys the tissue context and provide only average expression levels from cell populations or whole tissues. In this paper, we proposed a novel super resolution concept, second harmonic generation (SHG) super-resolution microscopy (SHaSM), and apply that to detect single short mRNA transcript, Her2 mRNA, beyond the diffraction limit. Nano-sized SHG crystals, barium titanium oxide BaTiO3 (BTO), were functionalized with two complimentary strands of Her2 mRNA after the chemical surface-modification. Dimer schematic was used to improve the specificity of detection and quantification, where two BTO monomers bind to the Her2 mRNA to form a dimer and being visualized via the SHaSM. SHaSM is able to detect single BTO nanocrystal with ∼20 nm spatial resolution, and differentiate BTO dimers (Her2 mRNA) from BTO monomers (non-specific bounded BTO nanocrystal) with high specificity.

Original languageEnglish (US)
Title of host publicationSingle Molecule Spectroscopy and Superresolution Imaging VII
PublisherSPIE
ISBN (Print)9780819498632
DOIs
StatePublished - Jan 1 2014
Externally publishedYes
EventSingle Molecule Spectroscopy and Superresolution Imaging VII - San Francisco, CA, United States
Duration: Feb 1 2014Feb 2 2014

Publication series

NameProgress in Biomedical Optics and Imaging - Proceedings of SPIE
Volume8950
ISSN (Print)1605-7422

Other

OtherSingle Molecule Spectroscopy and Superresolution Imaging VII
CountryUnited States
CitySan Francisco, CA
Period2/1/142/2/14

Fingerprint

Microscopy
Microscopic examination
dimers
microscopy
harmonics
Messenger RNA
harmonic generations
nanocrystals
monomers
cells
barium oxides
Dimers
circuit diagrams
titanium oxides
strands
Harmonic generation
therapy
Nanoparticles
Nanocrystals
spatial resolution

Keywords

  • MRNA
  • Second Harmonic Generation
  • Single cell
  • Super Resolution

ASJC Scopus subject areas

  • Electronic, Optical and Magnetic Materials
  • Biomaterials
  • Atomic and Molecular Physics, and Optics
  • Radiology Nuclear Medicine and imaging

Cite this

Liu, J., Cho, I. H., Kadam, U., & Irudayaraj, J. (2014). MRNA quantification via second harmonic super resolution microscopy. In Single Molecule Spectroscopy and Superresolution Imaging VII [89500N] (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; Vol. 8950). SPIE. https://doi.org/10.1117/12.2039818

MRNA quantification via second harmonic super resolution microscopy. / Liu, Jing; Cho, Il Hoon; Kadam, Ulhas; Irudayaraj, Joseph.

Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 2014. 89500N (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; Vol. 8950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Liu, J, Cho, IH, Kadam, U & Irudayaraj, J 2014, MRNA quantification via second harmonic super resolution microscopy. in Single Molecule Spectroscopy and Superresolution Imaging VII., 89500N, Progress in Biomedical Optics and Imaging - Proceedings of SPIE, vol. 8950, SPIE, Single Molecule Spectroscopy and Superresolution Imaging VII, San Francisco, CA, United States, 2/1/14. https://doi.org/10.1117/12.2039818
Liu J, Cho IH, Kadam U, Irudayaraj J. MRNA quantification via second harmonic super resolution microscopy. In Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE. 2014. 89500N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE). https://doi.org/10.1117/12.2039818
Liu, Jing ; Cho, Il Hoon ; Kadam, Ulhas ; Irudayaraj, Joseph. / MRNA quantification via second harmonic super resolution microscopy. Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 2014. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE).
@inproceedings{f9860d69f0924729b90e4acf7d2e0239,
title = "MRNA quantification via second harmonic super resolution microscopy",
abstract = "Cell-specific information on quantity and localization of key mRNA transcripts in single-cell level are critical to the assessment of cancer risk, therapy efficacy, and effective prevention strategies. However, most available technologies for mRNA detection rely on cell extraction that inherently destroys the tissue context and provide only average expression levels from cell populations or whole tissues. In this paper, we proposed a novel super resolution concept, second harmonic generation (SHG) super-resolution microscopy (SHaSM), and apply that to detect single short mRNA transcript, Her2 mRNA, beyond the diffraction limit. Nano-sized SHG crystals, barium titanium oxide BaTiO3 (BTO), were functionalized with two complimentary strands of Her2 mRNA after the chemical surface-modification. Dimer schematic was used to improve the specificity of detection and quantification, where two BTO monomers bind to the Her2 mRNA to form a dimer and being visualized via the SHaSM. SHaSM is able to detect single BTO nanocrystal with ∼20 nm spatial resolution, and differentiate BTO dimers (Her2 mRNA) from BTO monomers (non-specific bounded BTO nanocrystal) with high specificity.",
keywords = "MRNA, Second Harmonic Generation, Single cell, Super Resolution",
author = "Jing Liu and Cho, {Il Hoon} and Ulhas Kadam and Joseph Irudayaraj",
year = "2014",
month = "1",
day = "1",
doi = "10.1117/12.2039818",
language = "English (US)",
isbn = "9780819498632",
series = "Progress in Biomedical Optics and Imaging - Proceedings of SPIE",
publisher = "SPIE",
booktitle = "Single Molecule Spectroscopy and Superresolution Imaging VII",

}

TY - GEN

T1 - MRNA quantification via second harmonic super resolution microscopy

AU - Liu, Jing

AU - Cho, Il Hoon

AU - Kadam, Ulhas

AU - Irudayaraj, Joseph

PY - 2014/1/1

Y1 - 2014/1/1

N2 - Cell-specific information on quantity and localization of key mRNA transcripts in single-cell level are critical to the assessment of cancer risk, therapy efficacy, and effective prevention strategies. However, most available technologies for mRNA detection rely on cell extraction that inherently destroys the tissue context and provide only average expression levels from cell populations or whole tissues. In this paper, we proposed a novel super resolution concept, second harmonic generation (SHG) super-resolution microscopy (SHaSM), and apply that to detect single short mRNA transcript, Her2 mRNA, beyond the diffraction limit. Nano-sized SHG crystals, barium titanium oxide BaTiO3 (BTO), were functionalized with two complimentary strands of Her2 mRNA after the chemical surface-modification. Dimer schematic was used to improve the specificity of detection and quantification, where two BTO monomers bind to the Her2 mRNA to form a dimer and being visualized via the SHaSM. SHaSM is able to detect single BTO nanocrystal with ∼20 nm spatial resolution, and differentiate BTO dimers (Her2 mRNA) from BTO monomers (non-specific bounded BTO nanocrystal) with high specificity.

AB - Cell-specific information on quantity and localization of key mRNA transcripts in single-cell level are critical to the assessment of cancer risk, therapy efficacy, and effective prevention strategies. However, most available technologies for mRNA detection rely on cell extraction that inherently destroys the tissue context and provide only average expression levels from cell populations or whole tissues. In this paper, we proposed a novel super resolution concept, second harmonic generation (SHG) super-resolution microscopy (SHaSM), and apply that to detect single short mRNA transcript, Her2 mRNA, beyond the diffraction limit. Nano-sized SHG crystals, barium titanium oxide BaTiO3 (BTO), were functionalized with two complimentary strands of Her2 mRNA after the chemical surface-modification. Dimer schematic was used to improve the specificity of detection and quantification, where two BTO monomers bind to the Her2 mRNA to form a dimer and being visualized via the SHaSM. SHaSM is able to detect single BTO nanocrystal with ∼20 nm spatial resolution, and differentiate BTO dimers (Her2 mRNA) from BTO monomers (non-specific bounded BTO nanocrystal) with high specificity.

KW - MRNA

KW - Second Harmonic Generation

KW - Single cell

KW - Super Resolution

UR - http://www.scopus.com/inward/record.url?scp=84901747933&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84901747933&partnerID=8YFLogxK

U2 - 10.1117/12.2039818

DO - 10.1117/12.2039818

M3 - Conference contribution

AN - SCOPUS:84901747933

SN - 9780819498632

T3 - Progress in Biomedical Optics and Imaging - Proceedings of SPIE

BT - Single Molecule Spectroscopy and Superresolution Imaging VII

PB - SPIE

ER -