Microbial diversity in an intensively managed landscape is structured by landscape connectivity

James S. Griffin, Nanxi Lu, Naseer Sangwan, Angang Li, Melissa Dsouza, Andrew J Stumpf, Tiffany Sevilla, Alessandro Culotti, Laura Lynn Keefer, John J. Kelly, Jack A. Gilbert, George F. Wells, Aaron I. Packman

Research output: Contribution to journalArticle

Abstract

Intensively managed land increases the rate of nutrient and particle transport within a basin, but the impact of these changes on microbial community assembly patterns at the basin scale is not yet understood. The objective of this study was to investigate how landscape connectivity and dispersal impacts microbial diversity in an agricultural-dominated watershed. We characterized soil, sediment and water microbial communities along the Upper Sangamon River basin in Illinois-a 3600 km2 watershed strongly influenced by human activity, especially landscape modification and extensive fertilization for agriculture. We employed statistical and network analyses to reveal the microbial community structure and interactions in the critical zone (water, soil and sediment media). Using a Bayesian source tracking approach, we predicted microbial community connectivity within and between the environments. We identified strong connectivity within environments (up to 85.4 ± 13.3% of sequences in downstream water samples sourced from upstream samples, and 44.7 ± 26.6% in soil and sediment samples), but negligible connectivity across environments, which indicates that microbial dispersal was successful within but not between environments. Species sorting based on sample media type and environmental parameters was the dominant driver of community dissimilarity. Finally, we constructed operational taxonomic unit association networks for each environment and identified a number of co-occurrence relationships that were shared between habitats, suggesting that these are likely to be ecologically significant.

Original languageEnglish (US)
Article numberfix120
JournalFEMS microbiology ecology
Volume93
Issue number10
DOIs
StatePublished - Oct 1 2017

Fingerprint

connectivity
microbial community
Soil
Water
watershed
sediment
Agriculture
Fertilization
Rivers
basin
Human Activities
sorting
Ecosystem
community structure
human activity
soil
river basin
soil water
agriculture
Food

Keywords

  • Community assembly
  • Dispersal
  • Land use
  • Landscape connectivity

ASJC Scopus subject areas

  • Microbiology
  • Ecology
  • Applied Microbiology and Biotechnology

Cite this

Microbial diversity in an intensively managed landscape is structured by landscape connectivity. / Griffin, James S.; Lu, Nanxi; Sangwan, Naseer; Li, Angang; Dsouza, Melissa; Stumpf, Andrew J; Sevilla, Tiffany; Culotti, Alessandro; Keefer, Laura Lynn; Kelly, John J.; Gilbert, Jack A.; Wells, George F.; Packman, Aaron I.

In: FEMS microbiology ecology, Vol. 93, No. 10, fix120, 01.10.2017.

Research output: Contribution to journalArticle

Griffin, JS, Lu, N, Sangwan, N, Li, A, Dsouza, M, Stumpf, AJ, Sevilla, T, Culotti, A, Keefer, LL, Kelly, JJ, Gilbert, JA, Wells, GF & Packman, AI 2017, 'Microbial diversity in an intensively managed landscape is structured by landscape connectivity', FEMS microbiology ecology, vol. 93, no. 10, fix120. https://doi.org/10.1093/femsec/fix120
Griffin, James S. ; Lu, Nanxi ; Sangwan, Naseer ; Li, Angang ; Dsouza, Melissa ; Stumpf, Andrew J ; Sevilla, Tiffany ; Culotti, Alessandro ; Keefer, Laura Lynn ; Kelly, John J. ; Gilbert, Jack A. ; Wells, George F. ; Packman, Aaron I. / Microbial diversity in an intensively managed landscape is structured by landscape connectivity. In: FEMS microbiology ecology. 2017 ; Vol. 93, No. 10.
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