Abstract
Dynamics on free energy surfaces with high activation barriers are usually treated by few-state kinetics models, yielding characteristic rate coefficients and amplitudes depending on the connectivity of the states. When the barriers are low (<3 kT), the assumption of instantaneous equilibration of the transition state, and hence, the few-state kinetics treatment, break down. Langevin dynamics is used here to explore the characteristic trends that occur in such cases, as a function of barrier height, number of barriers, dimensionality of the free energy surface, and switching functions that describe how spectroscopic probes vary from reactant to product. The result is a systematic phenome-nological description of low barrier kinetics and dynamics.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 125-134 |
| Number of pages | 10 |
| Journal | Journal of Computational Chemistry |
| Volume | 27 |
| Issue number | 2 |
| DOIs | |
| State | Published - Jan 30 2006 |
Keywords
- Downhill folding
- Free energy surface
- Langevin dynamics
- Molecular time scale
ASJC Scopus subject areas
- General Chemistry
- Computational Mathematics
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