Low barrier kinetics: Dependence on observables and free energy surface

Hairong Ma, Martin Gruebele

Research output: Contribution to journalArticlepeer-review

Abstract

Dynamics on free energy surfaces with high activation barriers are usually treated by few-state kinetics models, yielding characteristic rate coefficients and amplitudes depending on the connectivity of the states. When the barriers are low (<3 kT), the assumption of instantaneous equilibration of the transition state, and hence, the few-state kinetics treatment, break down. Langevin dynamics is used here to explore the characteristic trends that occur in such cases, as a function of barrier height, number of barriers, dimensionality of the free energy surface, and switching functions that describe how spectroscopic probes vary from reactant to product. The result is a systematic phenome-nological description of low barrier kinetics and dynamics.

Original languageEnglish (US)
Pages (from-to)125-134
Number of pages10
JournalJournal of Computational Chemistry
Volume27
Issue number2
DOIs
StatePublished - Jan 30 2006

Keywords

  • Downhill folding
  • Free energy surface
  • Langevin dynamics
  • Molecular time scale

ASJC Scopus subject areas

  • General Chemistry
  • Computational Mathematics

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