KBase

The United States department of energy systems biology knowledgebase

Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry, Nomi L. Harris, Rick L. Stevens, Sergei Maslov, Paramvir Dehal, Doreen Ware, Fernando Perez, Shane Canon, Michael W. Sneddon, Matthew L. Henderson, William J. Riehl, Dan Murphy-Olson, Stephen Y. Chan, Roy T. Kamimura, Sunita Kumari, Meghan M. Drake, Thomas S. Brettin, Elizabeth M. Glass & 61 others Dylan Chivian, Dan Gunter, David J. Weston, Benjamin H. Allen, Jason Baumohl, Aaron A. Best, Ben Bowen, Steven E. Brenner, Christopher C. Bun, John Marc Chandonia, Jer Ming Chia, Ric Colasanti, Neal Conrad, James J. Davis, Brian H. Davison, Matthew Dejongh, Scott Devoid, Emily Dietrich, Inna Dubchak, Janaka N. Edirisinghe, Gang Fang, José P. Faria, Paul M. Frybarger, Wolfgang Gerlach, Mark Gerstein, Annette Greiner, James Gurtowski, Holly L. Haun, Fei He, Rashmi Jain, Marcin P. Joachimiak, Kevin P. Keegan, Shinnosuke Kondo, Vivek Kumar, Miriam L. Land, Folker Meyer, Marissa Mills, Pavel S. Novichkov, Taeyun Oh, Gary J Olsen, Robert Olson, Bruce Parrello, Shiran Pasternak, Erik Pearson, Sarah S. Poon, Gavin A. Price, Srividya Ramakrishnan, Priya Ranjan, Pamela C. Ronald, Michael C. Schatz, Samuel M.D. Seaver, Maulik Shukla, Roman A. Sutormin, Mustafa H. Syed, James Thomason, Nathan L. Tintle, Daifeng Wang, Fangfang Xia, Hyunseung Yoo, Shinjae Yoo, Dantong Yu

Research output: Contribution to journalLetter

Original languageEnglish (US)
Pages (from-to)566-569
Number of pages4
JournalNature Biotechnology
Volume36
Issue number7
DOIs
StatePublished - Jul 6 2018

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Database Management Systems
Systems Biology
Knowledge Bases
Computational Biology

ASJC Scopus subject areas

  • Biotechnology
  • Bioengineering
  • Applied Microbiology and Biotechnology
  • Molecular Medicine
  • Biomedical Engineering

Cite this

Arkin, A. P., Cottingham, R. W., Henry, C. S., Harris, N. L., Stevens, R. L., Maslov, S., ... Yu, D. (2018). KBase: The United States department of energy systems biology knowledgebase. Nature Biotechnology, 36(7), 566-569. https://doi.org/10.1038/nbt.4163

KBase : The United States department of energy systems biology knowledgebase. / Arkin, Adam P.; Cottingham, Robert W.; Henry, Christopher S.; Harris, Nomi L.; Stevens, Rick L.; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W.; Henderson, Matthew L.; Riehl, William J.; Murphy-Olson, Dan; Chan, Stephen Y.; Kamimura, Roy T.; Kumari, Sunita; Drake, Meghan M.; Brettin, Thomas S.; Glass, Elizabeth M.; Chivian, Dylan; Gunter, Dan; Weston, David J.; Allen, Benjamin H.; Baumohl, Jason; Best, Aaron A.; Bowen, Ben; Brenner, Steven E.; Bun, Christopher C.; Chandonia, John Marc; Chia, Jer Ming; Colasanti, Ric; Conrad, Neal; Davis, James J.; Davison, Brian H.; Dejongh, Matthew; Devoid, Scott; Dietrich, Emily; Dubchak, Inna; Edirisinghe, Janaka N.; Fang, Gang; Faria, José P.; Frybarger, Paul M.; Gerlach, Wolfgang; Gerstein, Mark; Greiner, Annette; Gurtowski, James; Haun, Holly L.; He, Fei; Jain, Rashmi; Joachimiak, Marcin P.; Keegan, Kevin P.; Kondo, Shinnosuke; Kumar, Vivek; Land, Miriam L.; Meyer, Folker; Mills, Marissa; Novichkov, Pavel S.; Oh, Taeyun; Olsen, Gary J; Olson, Robert; Parrello, Bruce; Pasternak, Shiran; Pearson, Erik; Poon, Sarah S.; Price, Gavin A.; Ramakrishnan, Srividya; Ranjan, Priya; Ronald, Pamela C.; Schatz, Michael C.; Seaver, Samuel M.D.; Shukla, Maulik; Sutormin, Roman A.; Syed, Mustafa H.; Thomason, James; Tintle, Nathan L.; Wang, Daifeng; Xia, Fangfang; Yoo, Hyunseung; Yoo, Shinjae; Yu, Dantong.

In: Nature Biotechnology, Vol. 36, No. 7, 06.07.2018, p. 566-569.

Research output: Contribution to journalLetter

Arkin, AP, Cottingham, RW, Henry, CS, Harris, NL, Stevens, RL, Maslov, S, Dehal, P, Ware, D, Perez, F, Canon, S, Sneddon, MW, Henderson, ML, Riehl, WJ, Murphy-Olson, D, Chan, SY, Kamimura, RT, Kumari, S, Drake, MM, Brettin, TS, Glass, EM, Chivian, D, Gunter, D, Weston, DJ, Allen, BH, Baumohl, J, Best, AA, Bowen, B, Brenner, SE, Bun, CC, Chandonia, JM, Chia, JM, Colasanti, R, Conrad, N, Davis, JJ, Davison, BH, Dejongh, M, Devoid, S, Dietrich, E, Dubchak, I, Edirisinghe, JN, Fang, G, Faria, JP, Frybarger, PM, Gerlach, W, Gerstein, M, Greiner, A, Gurtowski, J, Haun, HL, He, F, Jain, R, Joachimiak, MP, Keegan, KP, Kondo, S, Kumar, V, Land, ML, Meyer, F, Mills, M, Novichkov, PS, Oh, T, Olsen, GJ, Olson, R, Parrello, B, Pasternak, S, Pearson, E, Poon, SS, Price, GA, Ramakrishnan, S, Ranjan, P, Ronald, PC, Schatz, MC, Seaver, SMD, Shukla, M, Sutormin, RA, Syed, MH, Thomason, J, Tintle, NL, Wang, D, Xia, F, Yoo, H, Yoo, S & Yu, D 2018, 'KBase: The United States department of energy systems biology knowledgebase', Nature Biotechnology, vol. 36, no. 7, pp. 566-569. https://doi.org/10.1038/nbt.4163
Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S et al. KBase: The United States department of energy systems biology knowledgebase. Nature Biotechnology. 2018 Jul 6;36(7):566-569. https://doi.org/10.1038/nbt.4163
Arkin, Adam P. ; Cottingham, Robert W. ; Henry, Christopher S. ; Harris, Nomi L. ; Stevens, Rick L. ; Maslov, Sergei ; Dehal, Paramvir ; Ware, Doreen ; Perez, Fernando ; Canon, Shane ; Sneddon, Michael W. ; Henderson, Matthew L. ; Riehl, William J. ; Murphy-Olson, Dan ; Chan, Stephen Y. ; Kamimura, Roy T. ; Kumari, Sunita ; Drake, Meghan M. ; Brettin, Thomas S. ; Glass, Elizabeth M. ; Chivian, Dylan ; Gunter, Dan ; Weston, David J. ; Allen, Benjamin H. ; Baumohl, Jason ; Best, Aaron A. ; Bowen, Ben ; Brenner, Steven E. ; Bun, Christopher C. ; Chandonia, John Marc ; Chia, Jer Ming ; Colasanti, Ric ; Conrad, Neal ; Davis, James J. ; Davison, Brian H. ; Dejongh, Matthew ; Devoid, Scott ; Dietrich, Emily ; Dubchak, Inna ; Edirisinghe, Janaka N. ; Fang, Gang ; Faria, José P. ; Frybarger, Paul M. ; Gerlach, Wolfgang ; Gerstein, Mark ; Greiner, Annette ; Gurtowski, James ; Haun, Holly L. ; He, Fei ; Jain, Rashmi ; Joachimiak, Marcin P. ; Keegan, Kevin P. ; Kondo, Shinnosuke ; Kumar, Vivek ; Land, Miriam L. ; Meyer, Folker ; Mills, Marissa ; Novichkov, Pavel S. ; Oh, Taeyun ; Olsen, Gary J ; Olson, Robert ; Parrello, Bruce ; Pasternak, Shiran ; Pearson, Erik ; Poon, Sarah S. ; Price, Gavin A. ; Ramakrishnan, Srividya ; Ranjan, Priya ; Ronald, Pamela C. ; Schatz, Michael C. ; Seaver, Samuel M.D. ; Shukla, Maulik ; Sutormin, Roman A. ; Syed, Mustafa H. ; Thomason, James ; Tintle, Nathan L. ; Wang, Daifeng ; Xia, Fangfang ; Yoo, Hyunseung ; Yoo, Shinjae ; Yu, Dantong. / KBase : The United States department of energy systems biology knowledgebase. In: Nature Biotechnology. 2018 ; Vol. 36, No. 7. pp. 566-569.
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