TY - JOUR
T1 - Herbarium data
T2 - Global biodiversity and societal botanical needs for novel research: Global
AU - James, Shelley A.
AU - Soltis, Pamela S.
AU - Belbin, Lee
AU - Chapman, Arthur D.
AU - Nelson, Gil
AU - Paul, Deborah L.
AU - Collins, Matthew
N1 - Funding Information:
Integrated Digitized Biocollections (iDigBio) is funded by grants from the U.S. National Science Foundation’s Advancing Digitization of Biodiversity Collections program (Co-operative Agreements EF-1115210 and DBI-1547229). The authors thank the participants of the Using Biodiversity Specimen-Based Data to Study Global Change workshop, hosted by iDigBio and the Missouri Botanical Garden, December 2015 (http://goo.gl/Q8APZH), for their contributions, and the three anonymous reviewers for their valuable comments.
Funding Information:
The Thematic Collections Networks (TCNs) funded through the U.S. National Science Foundation’s Advancing Digitization of Biodiversity Collections (ADBC) program provide examples of compelling biodiversity hypotheses to be tested through funded digitization efforts. Novel research hypotheses, geographic and taxonomic themes, and societal demands of health and human services are needed to motivate future digitization and funding, and drive sustainability of collections digitization. GBIF established a task group to address the need to discover biocollections data not yet mobilized (Krishtalka et al., 2016), and others have proposed recommendations to the community and data aggregators for bridging biodiversity data gaps (Berents et al., 2010; Faith et al., 2013; Ariño et al., 2016; Geijzendorffer et al., 2016). Ultimately, the biodiversity data community needs to ask how herbaria, curators and researchers, and policy-makers should be playing a larger role in driving digitization efforts, and whether recognized data gaps should be preferentially addressed regardless of current research priorities. Improved access to biodiversity portal search data statistics or loan and collection use requests may help support digitization efforts. Including digitization as a component of museum or herbarium accreditation processes (e.g., American Alliance of Museums, National Standards for Australian Museums and Galleries) and strategic planning may help to drive systematic digitization, quality control, and the inventory of botanical collections. This includes encouraging botanical collections worldwide to provide and update information about their institution, holdings, and taxonomic expertise in online resources such as Index Herbariorum (http://sweetgum.nybg.org/science/ih/), the Global Registry of Biodiversity Repositories (GRBio; http://grbio.org/), and iDigBio’s U.S. Collections list (https://www.idigbio.org/portal/collections). Ensuring that newly collected data are discoverable and fit for broad reuse requires the community to foster, adopt, and update collection and data gathering best practices and standards through the activities of organizations such as TDWG.
Publisher Copyright:
© 2018 James et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America.
PY - 2018/2/1
Y1 - 2018/2/1
N2 - Building on centuries of research based on herbarium specimens gathered through time and around the globe, a new era of discovery, synthesis, and prediction using digitized collections data has begun. This paper provides an overview of how aggregated, open access botanical and associated biological, environmental, and ecological data sets, from genes to the ecosystem, can be used to document the impacts of global change on communities, organisms, and society; predict future impacts; and help to drive the remediation of change. Advocacy for botanical collections and their expansion is needed, including ongoing digitization and online publishing. The addition of non-traditional digitized data fields, user annotation capability, and born-digital field data collection enables the rapid access of rich, digitally available data sets for research, education, informed decision-making, and other scholarly and creative activities. Researchers are receiving enormous benefits from data aggregators including the Global Biodiversity Information Facility (GBIF), Integrated Digitized Biocollections (iDigBio), the Atlas of Living Australia (ALA), and the Biodiversity Heritage Library (BHL), but effective collaboration around data infrastructures is needed when working with large and disparate data sets. Tools for data discovery, visualization, analysis, and skills training are increasingly important for inspiring novel research that improves the intrinsic value of physical and digital botanical collections.
AB - Building on centuries of research based on herbarium specimens gathered through time and around the globe, a new era of discovery, synthesis, and prediction using digitized collections data has begun. This paper provides an overview of how aggregated, open access botanical and associated biological, environmental, and ecological data sets, from genes to the ecosystem, can be used to document the impacts of global change on communities, organisms, and society; predict future impacts; and help to drive the remediation of change. Advocacy for botanical collections and their expansion is needed, including ongoing digitization and online publishing. The addition of non-traditional digitized data fields, user annotation capability, and born-digital field data collection enables the rapid access of rich, digitally available data sets for research, education, informed decision-making, and other scholarly and creative activities. Researchers are receiving enormous benefits from data aggregators including the Global Biodiversity Information Facility (GBIF), Integrated Digitized Biocollections (iDigBio), the Atlas of Living Australia (ALA), and the Biodiversity Heritage Library (BHL), but effective collaboration around data infrastructures is needed when working with large and disparate data sets. Tools for data discovery, visualization, analysis, and skills training are increasingly important for inspiring novel research that improves the intrinsic value of physical and digital botanical collections.
KW - biodiversity data
KW - biodiversity standards
KW - global change
KW - herbarium collections
KW - informatics
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U2 - 10.1002/aps3.1024
DO - 10.1002/aps3.1024
M3 - Review article
AN - SCOPUS:85042526677
VL - 6
JO - Applications in Plant Sciences
JF - Applications in Plant Sciences
SN - 2168-0450
IS - 2
M1 - e1024
ER -