Genome sequences of nine Clostridium scindens strains isolated from human feces

Francelys V. Fernandez-Materan; Kelly Yovani Olivos-Caicedo; Steven L. Daniel; Kimberly K. O. Walden; Christopher J. Fields; Alvaro G. Hernandez; Joao M. P. Alves; Jason M. Ridlon

doi:10.1128/mra.00848-24

Genome sequences of nine Clostridium scindens strains isolated from human feces

Francelys V. Fernandez-Materan, Kelly Yovani Olivos-Caicedo, Steven L. Daniel, Kimberly K. O. Walden, Christopher J. Fields, Alvaro G. Hernandez, Joao M. P. Alves, Jason M. Ridlon

Research output: Contribution to journal › Article › peer-review

Abstract

Clostridium scindens is an important member of the gut microbiome. Strains of C. scindens are model organisms for bile acid and steroid metabolism studies. The genome sequences for nine C. scindens strains isolated from human feces are reported. Genomes ranged from 3,403,497 to 4,318,168 bp, 46.5% to 48% G+C content, and 3,386 to 4,137 protein-coding total genes.

Original language	English (US)
Article number	e00848-24
Journal	Microbiology Resource Announcements
Volume	13
Issue number	11
Early online date	Nov 4 2024
DOIs	https://doi.org/10.1128/mra.00848-24
State	Published - Nov 2024

Keywords

Clostridium scindens

ASJC Scopus subject areas

Molecular Biology
Immunology and Microbiology (miscellaneous)
Genetics

Online availability

10.1128/mra.00848-24License: CC BY

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title = "Genome sequences of nine Clostridium scindens strains isolated from human feces",

abstract = "Clostridium scindens is an important member of the gut microbiome. Strains of C. scindens are model organisms for bile acid and steroid metabolism studies. The genome sequences for nine C. scindens strains isolated from human feces are reported. Genomes ranged from 3,403,497 to 4,318,168 bp, 46.5% to 48% G+C content, and 3,386 to 4,137 protein-coding total genes.",

keywords = "Clostridium scindens",

author = "Fernandez-Materan, {Francelys V.} and Olivos-Caicedo, {Kelly Yovani} and Daniel, {Steven L.} and Walden, {Kimberly K. O.} and Fields, {Christopher J.} and Hernandez, {Alvaro G.} and Alves, {Joao M. P.} and Ridlon, {Jason M.}",

note = "C. scindens strains (I10, MO32, NTI82, S076, and S077) were obtained courtesy of Dr. Phillip Hylemon at VCU. We would like to acknowledge the financial support from the National Institutes of Health grant R03 AI147127 (J.M.R. and J.M.P.A). DNA sequencing was done at the Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign. HHS | National Institutes of Health (NIH) R03 AI147127 Francelys V. Fernandez-Materan Kelly Yovani Olivos-Caicedo Steven L. Daniel Kimberly K. O. Walden Christopher J. Fields Alvaro G. Hernandez Joao M. P. Alves Jason M. Ridlon C. scindens strains (I10, MO32, NTI82, S076, and S077) were obtained courtesy of Dr. Phillip Hylemon at VCU. We would like to acknowledge the support from the National Institutes of Health grant R03 AI147127 (J.M.R. and J.M.P.A). DNA sequencing was done at the Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign.",

year = "2024",

month = nov,

doi = "10.1128/mra.00848-24",

language = "English (US)",

volume = "13",

journal = "Microbiology Resource Announcements",

issn = "2169-8287",

publisher = "American Society for Microbiology",

number = "11",

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AU - Fernandez-Materan, Francelys V.

AU - Olivos-Caicedo, Kelly Yovani

AU - Daniel, Steven L.

AU - Walden, Kimberly K. O.

AU - Fields, Christopher J.

AU - Hernandez, Alvaro G.

AU - Alves, Joao M. P.

AU - Ridlon, Jason M.

N1 - C. scindens strains (I10, MO32, NTI82, S076, and S077) were obtained courtesy of Dr. Phillip Hylemon at VCU. We would like to acknowledge the financial support from the National Institutes of Health grant R03 AI147127 (J.M.R. and J.M.P.A). DNA sequencing was done at the Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign. HHS | National Institutes of Health (NIH) R03 AI147127 Francelys V. Fernandez-Materan Kelly Yovani Olivos-Caicedo Steven L. Daniel Kimberly K. O. Walden Christopher J. Fields Alvaro G. Hernandez Joao M. P. Alves Jason M. Ridlon C. scindens strains (I10, MO32, NTI82, S076, and S077) were obtained courtesy of Dr. Phillip Hylemon at VCU. We would like to acknowledge the support from the National Institutes of Health grant R03 AI147127 (J.M.R. and J.M.P.A). DNA sequencing was done at the Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign.

PY - 2024/11

Y1 - 2024/11

N2 - Clostridium scindens is an important member of the gut microbiome. Strains of C. scindens are model organisms for bile acid and steroid metabolism studies. The genome sequences for nine C. scindens strains isolated from human feces are reported. Genomes ranged from 3,403,497 to 4,318,168 bp, 46.5% to 48% G+C content, and 3,386 to 4,137 protein-coding total genes.

AB - Clostridium scindens is an important member of the gut microbiome. Strains of C. scindens are model organisms for bile acid and steroid metabolism studies. The genome sequences for nine C. scindens strains isolated from human feces are reported. Genomes ranged from 3,403,497 to 4,318,168 bp, 46.5% to 48% G+C content, and 3,386 to 4,137 protein-coding total genes.

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Genome sequences of nine Clostridium scindens strains isolated from human feces

Abstract

Keywords

ASJC Scopus subject areas

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Genome annotation of Nine Clostridium scindens Strains Isolated from Human Feces with Prokka v.1.14.6

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Genome sequences of nine Clostridium scindens strains isolated from human feces

Abstract

Keywords

ASJC Scopus subject areas

Online availability

Library availability

Related links

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Genome annotation of Nine Clostridium scindens Strains Isolated from Human Feces with Prokka v.1.14.6

Cite this