Fluorescence Imaging with One-Nanometer Accuracy (FIONA) of Cy3-DNA under Deoxygenation Conditions

Paul R Selvin; Tyler Lougheed; Melinda Tonks Hoffman; Hyokeun Park; Hamza Balci; Benjamin H Blehm; Erdal Toprak

doi:10.1101/pdb.prot4868

Fluorescence Imaging with One-Nanometer Accuracy (FIONA) of Cy3-DNA under Deoxygenation Conditions

Paul R Selvin
, Tyler Lougheed
, Melinda Tonks Hoffman
, Hyokeun Park
, Hamza Balci
, Benjamin H Blehm
, Erdal Toprak

Research output: Contribution to journal › Article › peer-review

Abstract

INTRODUCTIONFIONA, short for fluorescence imaging with one-nanometer accuracy, is a simple method for achieving localization of single (or single groups of) fluorophores with nanometer accuracy in the xy plane. This protocol provides the steps necessary to run a control experiment, using DNA labeled with Cy3, to assess the efficacy of the FIONA setup and the level of attainable resolution. The Cy3-DNA is immobilized on a coverslip and imaged under deoxygenation conditions. It is important that the fluorophores remain photostable throughout the experiment. This requires an oxygen-scavenging system (e.g., glucose oxidase and catalase) in the medium.

Original language	English (US)
Pages (from-to)	pdb.prot4868
Journal	Cold Spring Harbor Protocols
Volume	2007
DOIs	https://doi.org/10.1101/pdb.prot4868
State	Published - Oct 1 2007

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title = "Fluorescence Imaging with One-Nanometer Accuracy (FIONA) of Cy3-DNA under Deoxygenation Conditions",

abstract = "INTRODUCTIONFIONA, short for fluorescence imaging with one-nanometer accuracy, is a simple method for achieving localization of single (or single groups of) fluorophores with nanometer accuracy in the xy plane. This protocol provides the steps necessary to run a control experiment, using DNA labeled with Cy3, to assess the efficacy of the FIONA setup and the level of attainable resolution. The Cy3-DNA is immobilized on a coverslip and imaged under deoxygenation conditions. It is important that the fluorophores remain photostable throughout the experiment. This requires an oxygen-scavenging system (e.g., glucose oxidase and catalase) in the medium.",

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AU - Selvin, Paul R

AU - Lougheed, Tyler

AU - Tonks Hoffman, Melinda

AU - Park, Hyokeun

AU - Balci, Hamza

AU - Blehm, Benjamin H

AU - Toprak, Erdal

PY - 2007/10/1

Y1 - 2007/10/1

N2 - INTRODUCTIONFIONA, short for fluorescence imaging with one-nanometer accuracy, is a simple method for achieving localization of single (or single groups of) fluorophores with nanometer accuracy in the xy plane. This protocol provides the steps necessary to run a control experiment, using DNA labeled with Cy3, to assess the efficacy of the FIONA setup and the level of attainable resolution. The Cy3-DNA is immobilized on a coverslip and imaged under deoxygenation conditions. It is important that the fluorophores remain photostable throughout the experiment. This requires an oxygen-scavenging system (e.g., glucose oxidase and catalase) in the medium.

AB - INTRODUCTIONFIONA, short for fluorescence imaging with one-nanometer accuracy, is a simple method for achieving localization of single (or single groups of) fluorophores with nanometer accuracy in the xy plane. This protocol provides the steps necessary to run a control experiment, using DNA labeled with Cy3, to assess the efficacy of the FIONA setup and the level of attainable resolution. The Cy3-DNA is immobilized on a coverslip and imaged under deoxygenation conditions. It is important that the fluorophores remain photostable throughout the experiment. This requires an oxygen-scavenging system (e.g., glucose oxidase and catalase) in the medium.

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DO - 10.1101/pdb.prot4868

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SP - pdb.prot4868

JO - Cold Spring Harbor Protocols

JF - Cold Spring Harbor Protocols

ER -

Fluorescence Imaging with One-Nanometer Accuracy (FIONA) of Cy3-DNA under Deoxygenation Conditions

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