Exploiting Task-Oriented Resources to Learn Word Embeddings for Clinical Abbreviation Expansion

Yue Liu, Tao Ge, Kusum S. Mathews, Heng Ji, Deborah L. McGuinness

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

In the medical domain, identifying and expanding abbreviations in clinical texts is a vital task for both better human and machine understanding. It is a challenging task because many abbreviations are ambiguous especially for intensive care medicine texts, in which phrase abbreviations are frequently used. Besides the fact that there is no universal dictionary of clinical abbreviations and no universal rules for abbreviation writing, such texts are difficult to acquire, expensive to annotate and even sometimes, confusing to domain experts. This paper proposes a novel and effective approach - exploiting task-oriented resources to learn word embeddings for expanding abbreviations in clinical notes. We achieved 82.27% accuracy, close to expert human performance.

Original languageEnglish (US)
Title of host publicationACL-IJCNLP 2015 - BioNLP 2015
Subtitle of host publicationWorkshop on Biomedical Natural Language Processing, Proceedings of the Workshop
PublisherAssociation for Computational Linguistics (ACL)
Pages92-97
Number of pages6
ISBN (Electronic)1932432663, 9781932432664
StatePublished - 2015
Externally publishedYes
EventACL-IJCNLP 2015 Workshop on Biomedical Natural Language Processing, BioNLP 2015 - Beijing, China
Duration: Jul 30 2015 → …

Publication series

NameACL-IJCNLP 2015 - BioNLP 2015: Workshop on Biomedical Natural Language Processing, Proceedings of the Workshop

Conference

ConferenceACL-IJCNLP 2015 Workshop on Biomedical Natural Language Processing, BioNLP 2015
Country/TerritoryChina
CityBeijing
Period7/30/15 → …

ASJC Scopus subject areas

  • Health Informatics
  • Language and Linguistics
  • Computer Science Applications
  • Information Systems
  • Software
  • Biomedical Engineering

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