TY - JOUR
T1 - End-to-end AI framework for interpretable prediction of molecular and crystal properties
AU - Park, Hyun
AU - Zhu, Ruijie
AU - Huerta, E. A.
AU - Chaudhuri, Santanu
AU - Tajkhorshid, Emad
AU - Cooper, Donny
N1 - This work was supported by the FAIR Data program and the Braid project of the U.S. Department of Energy, Office of Science, Advanced Scientific Computing Research, under Contract Number DE-AC02-06CH11357. It used resources of the Argonne Leadership Computing Facility, which is a DOE Office of Science User Facility supported under Contract DE-AC02-06CH11357. This work was supported by Laboratory Directed Research and Development (LDRD) funding from Argonne National Laboratory, provided by the Director, Office of Science, of the U.S. Department of Energy under Contract No. DE-AC02-06CH11357. This research used the Delta advanced computing and data resource which is supported by the National Science Foundation (Award OAC 2005572) and the State of Illinois. Delta is a joint effort of the University of Illinois at Urbana-Champaign and its National Center for Supercomputing Applications. We thank Prasanna Balaprakash and the DeepHyper team for their expert support and guidance as we coupled their library into our computational AI framework.
PY - 2023/6/1
Y1 - 2023/6/1
N2 - We introduce an end-to-end computational framework that allows for hyperparameter optimization using the DeepHyper library, accelerated model training, and interpretable AI inference. The framework is based on state-of-the-art AI models including CGCNN, PhysNet, SchNet, MPNN, MPNN-transformer, and TorchMD-NET. We employ these AI models along with the benchmark QM9, hMOF, and MD17 datasets to showcase how the models can predict user-specified material properties within modern computing environments. We demonstrate transferable applications in the modeling of small molecules, inorganic crystals and nanoporous metal organic frameworks with a unified, standalone framework. We have deployed and tested this framework in the ThetaGPU supercomputer at the Argonne Leadership Computing Facility, and in the Delta supercomputer at the National Center for Supercomputing Applications to provide researchers with modern tools to conduct accelerated AI-driven discovery in leadership-class computing environments. We release these digital assets as open source scientific software in GitLab, and ready-to-use Jupyter notebooks in Google Colab.
AB - We introduce an end-to-end computational framework that allows for hyperparameter optimization using the DeepHyper library, accelerated model training, and interpretable AI inference. The framework is based on state-of-the-art AI models including CGCNN, PhysNet, SchNet, MPNN, MPNN-transformer, and TorchMD-NET. We employ these AI models along with the benchmark QM9, hMOF, and MD17 datasets to showcase how the models can predict user-specified material properties within modern computing environments. We demonstrate transferable applications in the modeling of small molecules, inorganic crystals and nanoporous metal organic frameworks with a unified, standalone framework. We have deployed and tested this framework in the ThetaGPU supercomputer at the Argonne Leadership Computing Facility, and in the Delta supercomputer at the National Center for Supercomputing Applications to provide researchers with modern tools to conduct accelerated AI-driven discovery in leadership-class computing environments. We release these digital assets as open source scientific software in GitLab, and ready-to-use Jupyter notebooks in Google Colab.
KW - AI
KW - inorganic crystals
KW - interpretable AI
KW - metal-organic frameworks
KW - small molecules
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U2 - 10.1088/2632-2153/acd434
DO - 10.1088/2632-2153/acd434
M3 - Article
AN - SCOPUS:85164036896
SN - 2632-2153
VL - 4
JO - Machine Learning: Science and Technology
JF - Machine Learning: Science and Technology
IS - 2
M1 - 025036
ER -