TY - JOUR
T1 - Do chromogenic assays of soil enzyme activities need buffers? More disadvantages than advantages of modified universal buffer in the para-nitrophenyl-based assay of phosphomonoesterase and β-glucosidase activities
AU - Li, Chongyang
AU - Wade, Jordon
AU - Vollbracht, Kelly
AU - Hooper, Diane G.
AU - Wills, Skye A.
AU - Margenot, Andrew J.
N1 - Publisher Copyright:
© 2024 The Authors
PY - 2025/3
Y1 - 2025/3
N2 - Buffers are commonly employed in soil enzyme activity assays to maintain a constant pH during the assay incubation, but soils are already buffered and buffer can alter apparent Vmax and Km. To test for potential artifacts of buffer on soil enzyme activities, we selected 32 soils to furnish a broad range of physicochemical characteristics and assayed soil β-glucosidase (BG) and phosphomonoesterase (PME) activities at varied substrate concentrations in water or in modified universal buffer (MUB). The pH of assays differed by up to 1.6 units from the measured soil pH (1:2, m/v in water), but MUB did not maintain pH any better than water. Compared to water, MUB generally suppressed activities (by ≈31%), apparent Vmax (by ≈32%) and Km (by ≈52%) of PME, but yielded similar activities (by ≈4% difference) and apparent Vmax (by ≈9% difference) for BG. Soils with higher pH tended to have larger degree of PME actvity suppression by MUB compared to water. Based on the best practice of using a substrate concentration that is 5 × Km to approximate substrate saturation of the enzyme, the median substrate requirement to assay PME across the 32 soils was ≈50 mM g−1 in water and 25 mM g−1 in MUB. Regardless of assay matrix, the commonly employed PME substrate concentration of 10 mM g−1 (e.g., Tabatabai, 1994) is insufficient for accurate activity assays (i.e., activities assayed at Vmax). In contrast, for BG assays the commonly used pNP-linked substrate concentration of 10 mM g−1 appears appropriate for most soils with a median substrate requirement of ≈4 mM g−1 in water and ≈6 mM g−1 in MUB. Our results support previous propositions that buffers are unnecessary for assaying soil enzyme activities and may alter apparent kinetic parameters (Km, Vmax). Potential soil- and enzyme-specific substrate requirements should be determined a priori to ensure accurate measurements of enzyme activities in soils.
AB - Buffers are commonly employed in soil enzyme activity assays to maintain a constant pH during the assay incubation, but soils are already buffered and buffer can alter apparent Vmax and Km. To test for potential artifacts of buffer on soil enzyme activities, we selected 32 soils to furnish a broad range of physicochemical characteristics and assayed soil β-glucosidase (BG) and phosphomonoesterase (PME) activities at varied substrate concentrations in water or in modified universal buffer (MUB). The pH of assays differed by up to 1.6 units from the measured soil pH (1:2, m/v in water), but MUB did not maintain pH any better than water. Compared to water, MUB generally suppressed activities (by ≈31%), apparent Vmax (by ≈32%) and Km (by ≈52%) of PME, but yielded similar activities (by ≈4% difference) and apparent Vmax (by ≈9% difference) for BG. Soils with higher pH tended to have larger degree of PME actvity suppression by MUB compared to water. Based on the best practice of using a substrate concentration that is 5 × Km to approximate substrate saturation of the enzyme, the median substrate requirement to assay PME across the 32 soils was ≈50 mM g−1 in water and 25 mM g−1 in MUB. Regardless of assay matrix, the commonly employed PME substrate concentration of 10 mM g−1 (e.g., Tabatabai, 1994) is insufficient for accurate activity assays (i.e., activities assayed at Vmax). In contrast, for BG assays the commonly used pNP-linked substrate concentration of 10 mM g−1 appears appropriate for most soils with a median substrate requirement of ≈4 mM g−1 in water and ≈6 mM g−1 in MUB. Our results support previous propositions that buffers are unnecessary for assaying soil enzyme activities and may alter apparent kinetic parameters (Km, Vmax). Potential soil- and enzyme-specific substrate requirements should be determined a priori to ensure accurate measurements of enzyme activities in soils.
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U2 - 10.1016/j.soilbio.2024.109704
DO - 10.1016/j.soilbio.2024.109704
M3 - Article
AN - SCOPUS:85214311744
SN - 0038-0717
VL - 202
JO - Soil Biology and Biochemistry
JF - Soil Biology and Biochemistry
M1 - 109704
ER -