Do chromogenic assays of soil enzyme activities need buffers? More disadvantages than advantages of modified universal buffer in the para-nitrophenyl-based assay of phosphomonoesterase and β-glucosidase activities

Chongyang Li, Jordon Wade, Kelly Vollbracht, Diane G. Hooper, Skye A. Wills, Andrew J. Margenot

Research output: Contribution to journalArticlepeer-review

Abstract

Buffers are commonly employed in soil enzyme activity assays to maintain a constant pH during the assay incubation, but soils are already buffered and buffer can alter apparent Vmax and Km. To test for potential artifacts of buffer on soil enzyme activities, we selected 32 soils to furnish a broad range of physicochemical characteristics and assayed soil β-glucosidase (BG) and phosphomonoesterase (PME) activities at varied substrate concentrations in water or in modified universal buffer (MUB). The pH of assays differed by up to 1.6 units from the measured soil pH (1:2, m/v in water), but MUB did not maintain pH any better than water. Compared to water, MUB generally suppressed activities (by ≈31%), apparent Vmax (by ≈32%) and Km (by ≈52%) of PME, but yielded similar activities (by ≈4% difference) and apparent Vmax (by ≈9% difference) for BG. Soils with higher pH tended to have larger degree of PME actvity suppression by MUB compared to water. Based on the best practice of using a substrate concentration that is 5 × Km to approximate substrate saturation of the enzyme, the median substrate requirement to assay PME across the 32 soils was ≈50 mM g−1 in water and 25 mM g−1 in MUB. Regardless of assay matrix, the commonly employed PME substrate concentration of 10 mM g−1 (e.g., Tabatabai, 1994) is insufficient for accurate activity assays (i.e., activities assayed at Vmax). In contrast, for BG assays the commonly used pNP-linked substrate concentration of 10 mM g−1 appears appropriate for most soils with a median substrate requirement of ≈4 mM g−1 in water and ≈6 mM g−1 in MUB. Our results support previous propositions that buffers are unnecessary for assaying soil enzyme activities and may alter apparent kinetic parameters (Km, Vmax). Potential soil- and enzyme-specific substrate requirements should be determined a priori to ensure accurate measurements of enzyme activities in soils.

Original languageEnglish (US)
Article number109704
JournalSoil Biology and Biochemistry
Volume202
DOIs
StatePublished - Mar 2025

ASJC Scopus subject areas

  • Microbiology
  • Soil Science

Fingerprint

Dive into the research topics of 'Do chromogenic assays of soil enzyme activities need buffers? More disadvantages than advantages of modified universal buffer in the para-nitrophenyl-based assay of phosphomonoesterase and β-glucosidase activities'. Together they form a unique fingerprint.

Cite this