Distribution and regulation of stochasticity and plasticity in Saccharomyces cerevisiae

Roy David Dar, D. K. Karig, J. F. Cooke, C. D. Cox, M. L. Simpson

Research output: Contribution to journalArticle

Abstract

Stochasticity is an inherent feature of complex systems with nanoscale structure. In such systems information is represented by small collections of elements (e.g., a few electrons on a quantum dot), and small variations in the populations of these elements may lead to big uncertainties in the information. Unfortunately, little is known about how to work within this inherently noisy environment to design robust functionality into complex nanoscale systems. Here, we look to the biological cell as an intriguing model system where evolution has mediated the trade-offs between fluctuations and function, and in particular we look at the relationships and trade-offs between stochastic and deterministic responses in the gene expression of budding yeast (Saccharomyces cerevisiae). We find gene regulatory arrangements that control the stochastic and deterministic components of expression, and show that genes that have evolved to respond to stimuli (stress) in the most strongly deterministic way exhibit the most noise in the absence of the stimuli. We show that this relationship is consistent with a bursty two-state model of gene expression, and demonstrate that this regulatory motif generates the most uncertainty in gene expression when there is the greatest uncertainty in the optimal level of gene expression.

Original languageEnglish (US)
Article number037106
JournalChaos
Volume20
Issue number3
DOIs
StatePublished - Jul 13 2010
Externally publishedYes

Fingerprint

saccharomyces
Stochasticity
gene expression
Saccharomyces Cerevisiae
Gene expression
plastic properties
Plasticity
Yeast
Gene Expression
complex systems
Uncertainty
genes
stimuli
Large scale systems
Genes
Trade-offs
Gene
Robust Design
information systems
yeast

ASJC Scopus subject areas

  • Statistical and Nonlinear Physics
  • Mathematical Physics
  • Physics and Astronomy(all)
  • Applied Mathematics

Cite this

Distribution and regulation of stochasticity and plasticity in Saccharomyces cerevisiae. / Dar, Roy David; Karig, D. K.; Cooke, J. F.; Cox, C. D.; Simpson, M. L.

In: Chaos, Vol. 20, No. 3, 037106, 13.07.2010.

Research output: Contribution to journalArticle

Dar, Roy David ; Karig, D. K. ; Cooke, J. F. ; Cox, C. D. ; Simpson, M. L. / Distribution and regulation of stochasticity and plasticity in Saccharomyces cerevisiae. In: Chaos. 2010 ; Vol. 20, No. 3.
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