Discovery Through the Computational Microscope

Eric H. Lee, Jen Hsin, Marcos Sotomayor, Gemma Comellas, Klaus Schulten

Research output: Contribution to journalReview article

Abstract

All-atom molecular dynamics simulations have become increasingly popular as a tool to investigate protein function and dynamics. However, researchers are concerned about the short time scales covered by simulations, the apparent impossibility to model large and integral biomolecular systems, and the actual predictive power of the molecular dynamics methodology. Here we review simulations that were in the past both hotly disputed and considered key successes, namely of proteins with mainly mechanical functions (titin, fibrinogen, ankyrin, and cadherin). The simulation work covered shows how state-of-the-art modeling alleviates some of the prior concerns and how unrefuted discoveries are made through the "computational microscope.".

Original languageEnglish (US)
Pages (from-to)1295-1306
Number of pages12
JournalStructure
Volume17
Issue number10
DOIs
StatePublished - Oct 14 2009

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Molecular Dynamics Simulation
Ankyrins
Connectin
Cadherins
Fibrinogen
Proteins
Research Personnel

Keywords

  • PROTEINS

ASJC Scopus subject areas

  • Molecular Biology
  • Structural Biology

Cite this

Lee, E. H., Hsin, J., Sotomayor, M., Comellas, G., & Schulten, K. (2009). Discovery Through the Computational Microscope. Structure, 17(10), 1295-1306. https://doi.org/10.1016/j.str.2009.09.001

Discovery Through the Computational Microscope. / Lee, Eric H.; Hsin, Jen; Sotomayor, Marcos; Comellas, Gemma; Schulten, Klaus.

In: Structure, Vol. 17, No. 10, 14.10.2009, p. 1295-1306.

Research output: Contribution to journalReview article

Lee, EH, Hsin, J, Sotomayor, M, Comellas, G & Schulten, K 2009, 'Discovery Through the Computational Microscope', Structure, vol. 17, no. 10, pp. 1295-1306. https://doi.org/10.1016/j.str.2009.09.001
Lee EH, Hsin J, Sotomayor M, Comellas G, Schulten K. Discovery Through the Computational Microscope. Structure. 2009 Oct 14;17(10):1295-1306. https://doi.org/10.1016/j.str.2009.09.001
Lee, Eric H. ; Hsin, Jen ; Sotomayor, Marcos ; Comellas, Gemma ; Schulten, Klaus. / Discovery Through the Computational Microscope. In: Structure. 2009 ; Vol. 17, No. 10. pp. 1295-1306.
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