Current status of community resources and priorities for weed genomics research

Jacob Montgomery; Sarah Morran; Dana R. MacGregor; J. Scott McElroy; Paul Neve; Célia Neto; Martin M. Vila-Aiub; Maria Victoria Sandoval; Analia I. Menéndez; Julia M. Kreiner; Longjiang Fan; Ana L. Caicedo; Peter J. Maughan; Bianca Assis Barbosa Martins; Jagoda Mika; Alberto Collavo; Aldo Merotto; Nithya K. Subramanian; Muthukumar V. Bagavathiannan; Luan Cutti; Md Mazharul Islam; Bikram S. Gill; Robert Cicchillo; Roger Gast; Neeta Soni; Terry R. Wright; Gina Zastrow-Hayes; Gregory May; Jenna M. Malone; Deepmala Sehgal; Shiv Shankhar Kaundun; Richard P. Dale; Barend Juan Vorster; Bodo Peters; Jens Lerchl; Patrick J. Tranel; Roland Beffa; Alexandre Fournier-Level; Mithila Jugulam; Kevin Fengler; Victor Llaca; Eric L. Patterson; Todd A. Gaines

doi:10.1186/s13059-024-03274-y

Current status of community resources and priorities for weed genomics research

Jacob Montgomery, Sarah Morran, Dana R. MacGregor, J. Scott McElroy, Paul Neve, Célia Neto, Martin M. Vila-Aiub, Maria Victoria Sandoval, Analia I. Menéndez, Julia M. Kreiner, Longjiang Fan, Ana L. Caicedo, Peter J. Maughan, Bianca Assis Barbosa Martins, Jagoda Mika, Alberto Collavo, Aldo Merotto, Nithya K. Subramanian, Muthukumar V. Bagavathiannan, Luan CuttiMd Mazharul Islam, Bikram S. Gill, Robert Cicchillo, Roger Gast, Neeta Soni, Terry R. Wright, Gina Zastrow-Hayes, Gregory May, Jenna M. Malone, Deepmala Sehgal, Shiv Shankhar Kaundun, Richard P. Dale, Barend Juan Vorster, Bodo Peters, Jens Lerchl, Patrick J. Tranel, Roland Beffa, Alexandre Fournier-Level, Mithila Jugulam, Kevin Fengler, Victor Llaca, Eric L. Patterson, Todd A. Gaines

Crop Sciences

Research output: Contribution to journal › Review article › peer-review

Abstract

Weeds are attractive models for basic and applied research due to their impacts on agricultural systems and capacity to swiftly adapt in response to anthropogenic selection pressures. Currently, a lack of genomic information precludes research to elucidate the genetic basis of rapid adaptation for important traits like herbicide resistance and stress tolerance and the effect of evolutionary mechanisms on wild populations. The International Weed Genomics Consortium is a collaborative group of scientists focused on developing genomic resources to impact research into sustainable, effective weed control methods and to provide insights about stress tolerance and adaptation to assist crop breeding.

Original language	English (US)
Article number	139
Journal	Genome biology
Volume	25
Issue number	1
Early online date	May 27 2024
DOIs	https://doi.org/10.1186/s13059-024-03274-y
State	Published - Dec 2024

Keywords

Herbicide resistance
Public resources
Rapid adaptation
Reference genomes
Weed science

ASJC Scopus subject areas

Ecology, Evolution, Behavior and Systematics
Genetics
Cell Biology

Online availability

10.1186/s13059-024-03274-yLicense: CC BY

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Montgomery, J., Morran, S., MacGregor, D. R., McElroy, J. S., Neve, P., Neto, C., Vila-Aiub, M. M., Sandoval, M. V., Menéndez, A. I., Kreiner, J. M., Fan, L., Caicedo, A. L., Maughan, P. J., Martins, B. A. B., Mika, J., Collavo, A., Merotto, A., Subramanian, N. K., Bagavathiannan, M. V., ... Gaines, T. A. (2024). Current status of community resources and priorities for weed genomics research. Genome biology, 25(1), Article 139. https://doi.org/10.1186/s13059-024-03274-y

Montgomery, J, Morran, S, MacGregor, DR, McElroy, JS, Neve, P, Neto, C, Vila-Aiub, MM, Sandoval, MV, Menéndez, AI, Kreiner, JM, Fan, L, Caicedo, AL, Maughan, PJ, Martins, BAB, Mika, J, Collavo, A, Merotto, A, Subramanian, NK, Bagavathiannan, MV, Cutti, L, Islam, MM, Gill, BS, Cicchillo, R, Gast, R, Soni, N, Wright, TR, Zastrow-Hayes, G, May, G, Malone, JM, Sehgal, D, Kaundun, SS, Dale, RP, Vorster, BJ, Peters, B, Lerchl, J, Tranel, PJ, Beffa, R, Fournier-Level, A, Jugulam, M, Fengler, K, Llaca, V, Patterson, EL & Gaines, TA 2024, 'Current status of community resources and priorities for weed genomics research', Genome biology, vol. 25, no. 1, 139. https://doi.org/10.1186/s13059-024-03274-y

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title = "Current status of community resources and priorities for weed genomics research",

abstract = "Weeds are attractive models for basic and applied research due to their impacts on agricultural systems and capacity to swiftly adapt in response to anthropogenic selection pressures. Currently, a lack of genomic information precludes research to elucidate the genetic basis of rapid adaptation for important traits like herbicide resistance and stress tolerance and the effect of evolutionary mechanisms on wild populations. The International Weed Genomics Consortium is a collaborative group of scientists focused on developing genomic resources to impact research into sustainable, effective weed control methods and to provide insights about stress tolerance and adaptation to assist crop breeding.",

keywords = "Herbicide resistance, Public resources, Rapid adaptation, Reference genomes, Weed science",

author = "Jacob Montgomery and Sarah Morran and MacGregor, \{Dana R.\} and McElroy, \{J. Scott\} and Paul Neve and C{\'e}lia Neto and Vila-Aiub, \{Martin M.\} and Sandoval, \{Maria Victoria\} and Men{\'e}ndez, \{Analia I.\} and Kreiner, \{Julia M.\} and Longjiang Fan and Caicedo, \{Ana L.\} and Maughan, \{Peter J.\} and Martins, \{Bianca Assis Barbosa\} and Jagoda Mika and Alberto Collavo and Aldo Merotto and Subramanian, \{Nithya K.\} and Bagavathiannan, \{Muthukumar V.\} and Luan Cutti and Islam, \{Md Mazharul\} and Gill, \{Bikram S.\} and Robert Cicchillo and Roger Gast and Neeta Soni and Wright, \{Terry R.\} and Gina Zastrow-Hayes and Gregory May and Malone, \{Jenna M.\} and Deepmala Sehgal and Kaundun, \{Shiv Shankhar\} and Dale, \{Richard P.\} and Vorster, \{Barend Juan\} and Bodo Peters and Jens Lerchl and Tranel, \{Patrick J.\} and Roland Beffa and Alexandre Fournier-Level and Mithila Jugulam and Kevin Fengler and Victor Llaca and Patterson, \{Eric L.\} and Gaines, \{Todd A.\}",

note = "The International Weed Genomics Consortium is supported by BASF SE, Bayer AG, Syngenta Ltd, Corteva Agriscience, CropLife International (Global Herbicide Resistance Action Committee), the Foundation for Food and Agriculture Research (Award DSnew-0000000024), and two conference grants from USDA-NIFA (Award numbers 2021\textbackslash{}u201367013-33570 and 2023-67013-38785).",

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AU - Montgomery, Jacob

AU - Morran, Sarah

AU - MacGregor, Dana R.

AU - McElroy, J. Scott

AU - Neve, Paul

AU - Neto, Célia

AU - Vila-Aiub, Martin M.

AU - Sandoval, Maria Victoria

AU - Menéndez, Analia I.

AU - Kreiner, Julia M.

AU - Fan, Longjiang

AU - Caicedo, Ana L.

AU - Maughan, Peter J.

AU - Martins, Bianca Assis Barbosa

AU - Mika, Jagoda

AU - Collavo, Alberto

AU - Merotto, Aldo

AU - Subramanian, Nithya K.

AU - Bagavathiannan, Muthukumar V.

AU - Cutti, Luan

AU - Islam, Md Mazharul

AU - Gill, Bikram S.

AU - Cicchillo, Robert

AU - Gast, Roger

AU - Soni, Neeta

AU - Wright, Terry R.

AU - Zastrow-Hayes, Gina

AU - May, Gregory

AU - Malone, Jenna M.

AU - Sehgal, Deepmala

AU - Kaundun, Shiv Shankhar

AU - Dale, Richard P.

AU - Vorster, Barend Juan

AU - Peters, Bodo

AU - Lerchl, Jens

AU - Tranel, Patrick J.

AU - Beffa, Roland

AU - Fournier-Level, Alexandre

AU - Jugulam, Mithila

AU - Fengler, Kevin

AU - Llaca, Victor

AU - Patterson, Eric L.

AU - Gaines, Todd A.

N1 - The International Weed Genomics Consortium is supported by BASF SE, Bayer AG, Syngenta Ltd, Corteva Agriscience, CropLife International (Global Herbicide Resistance Action Committee), the Foundation for Food and Agriculture Research (Award DSnew-0000000024), and two conference grants from USDA-NIFA (Award numbers 2021\u201367013-33570 and 2023-67013-38785).

PY - 2024/12

Y1 - 2024/12

N2 - Weeds are attractive models for basic and applied research due to their impacts on agricultural systems and capacity to swiftly adapt in response to anthropogenic selection pressures. Currently, a lack of genomic information precludes research to elucidate the genetic basis of rapid adaptation for important traits like herbicide resistance and stress tolerance and the effect of evolutionary mechanisms on wild populations. The International Weed Genomics Consortium is a collaborative group of scientists focused on developing genomic resources to impact research into sustainable, effective weed control methods and to provide insights about stress tolerance and adaptation to assist crop breeding.

AB - Weeds are attractive models for basic and applied research due to their impacts on agricultural systems and capacity to swiftly adapt in response to anthropogenic selection pressures. Currently, a lack of genomic information precludes research to elucidate the genetic basis of rapid adaptation for important traits like herbicide resistance and stress tolerance and the effect of evolutionary mechanisms on wild populations. The International Weed Genomics Consortium is a collaborative group of scientists focused on developing genomic resources to impact research into sustainable, effective weed control methods and to provide insights about stress tolerance and adaptation to assist crop breeding.

KW - Herbicide resistance

KW - Public resources

KW - Rapid adaptation

KW - Reference genomes

KW - Weed science

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U2 - 10.1186/s13059-024-03274-y

DO - 10.1186/s13059-024-03274-y

M3 - Review article

C2 - 38802856

AN - SCOPUS:85194525245

SN - 1474-7596

VL - 25

JO - Genome biology

JF - Genome biology

IS - 1

M1 - 139

ER -

Current status of community resources and priorities for weed genomics research

Abstract

Keywords

ASJC Scopus subject areas

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