Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans

Cynthia I. Rodriguez; Ali Keshavarzian; Bruce R. Hamaker; Feitong Liu; Genelle R. Lunken; Heather Rasmussen; Hongwei Zhou; Julien Tap; Kelly S. Swanson; Maria Ukhanova; Marion Leclerc; Martin Gotteland; Paola Navarrete; Petia Kovatcheva-Datchary; Wendy J. Dahl; Jennifer B.H. Martiny

doi:10.1038/s41597-023-02254-4

Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans

Cynthia I. Rodriguez, Ali Keshavarzian, Bruce R. Hamaker, Feitong Liu, Genelle R. Lunken, Heather Rasmussen, Hongwei Zhou, Julien Tap, Kelly S. Swanson, Maria Ukhanova, Marion Leclerc, Martin Gotteland, Paola Navarrete, Petia Kovatcheva-Datchary, Wendy J. Dahl, Jennifer B.H. Martiny

Research output: Contribution to journal › Article › peer-review

Abstract

Next generation amplicon sequencing has created a plethora of data from human microbiomes. The accessibility to this scientific data and its corresponding metadata is important for its reuse, to allow for new discoveries, verification of published results, and serving as path for reproducibility. Dietary fiber consumption has been associated with a variety of health benefits that are thought to be mediated by gut microbiota. To enable direct comparisons of the response of the gut microbiome to fiber, we obtained 16S rRNA sequencing data and its corresponding metadata from 11 fiber intervention studies for a total of 2,368 samples. We provide curated and pre-processed genetic data and common metadata for comparison across the different studies.

Original language	English (US)
Article number	346
Journal	Scientific Data
Volume	10
Issue number	1
DOIs	https://doi.org/10.1038/s41597-023-02254-4
State	Published - Dec 2023

ASJC Scopus subject areas

Statistics and Probability
Information Systems
Education
Computer Science Applications
Statistics, Probability and Uncertainty
Library and Information Sciences

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10.1038/s41597-023-02254-4

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Rodriguez, C. I., Keshavarzian, A., Hamaker, B. R., Liu, F., Lunken, G. R., Rasmussen, H., Zhou, H., Tap, J., Swanson, K. S., Ukhanova, M., Leclerc, M., Gotteland, M., Navarrete, P., Kovatcheva-Datchary, P., Dahl, W. J., & Martiny, J. B. H. (2023). Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans. Scientific Data, 10(1), Article 346. https://doi.org/10.1038/s41597-023-02254-4

Rodriguez, CI, Keshavarzian, A, Hamaker, BR, Liu, F, Lunken, GR, Rasmussen, H, Zhou, H, Tap, J, Swanson, KS, Ukhanova, M, Leclerc, M, Gotteland, M, Navarrete, P, Kovatcheva-Datchary, P, Dahl, WJ & Martiny, JBH 2023, 'Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans', Scientific Data, vol. 10, no. 1, 346. https://doi.org/10.1038/s41597-023-02254-4

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abstract = "Next generation amplicon sequencing has created a plethora of data from human microbiomes. The accessibility to this scientific data and its corresponding metadata is important for its reuse, to allow for new discoveries, verification of published results, and serving as path for reproducibility. Dietary fiber consumption has been associated with a variety of health benefits that are thought to be mediated by gut microbiota. To enable direct comparisons of the response of the gut microbiome to fiber, we obtained 16S rRNA sequencing data and its corresponding metadata from 11 fiber intervention studies for a total of 2,368 samples. We provide curated and pre-processed genetic data and common metadata for comparison across the different studies.",

author = "Rodriguez, {Cynthia I.} and Ali Keshavarzian and Hamaker, {Bruce R.} and Feitong Liu and Lunken, {Genelle R.} and Heather Rasmussen and Hongwei Zhou and Julien Tap and Swanson, {Kelly S.} and Maria Ukhanova and Marion Leclerc and Martin Gotteland and Paola Navarrete and Petia Kovatcheva-Datchary and Dahl, {Wendy J.} and Martiny, {Jennifer B.H.}",

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AU - Lunken, Genelle R.

AU - Rasmussen, Heather

AU - Zhou, Hongwei

AU - Tap, Julien

AU - Swanson, Kelly S.

AU - Ukhanova, Maria

AU - Leclerc, Marion

AU - Gotteland, Martin

AU - Navarrete, Paola

AU - Kovatcheva-Datchary, Petia

AU - Dahl, Wendy J.

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Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans

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