Comparative CYP‐omic analysis between the DDT‐susceptible and ‐resistant Drosophila melanogaster strains 91‐C and 91‐R

Keon Mook Seong, Brad S. Coates, May R Berenbaum, John M. Clark, Barry R. Pittendrigh

Research output: Contribution to journalArticle

Abstract

BACKGROUND: Cytochrome P450 monooxygenases (P450s) are involved in the biosynthesis of endogenous intracellular compounds and the metabolism of xenobiotics, including chemical insecticides. We investigated the structural and expression level variance across all P450 genes with respect to the evolution of insecticide resistance under multigenerational dichlorodiphenyltrichloroethane (DDT) selection. RESULTS: RNA-sequencing (RNA-seq) and reverse transcriptase–quantitative polymerase chain reaction (RT-qPCR) indicated that the transcript levels of seven P450 genes were significantly up-regulated and three P450 genes were down-regulated in the DDT-resistant strain 91-R, as compared to the control strain 91-C. The overexpression of Cyp6g1 was associated with the presence of an Accord and an HMS-Beagle element insertion in the 5′ upstream region in conjunction with copy number variation in the 91-R strain, but not in the 91-C strain. A total of 122 (50.2%) fixed nonsynonymous (amino acid-changing) mutations were found between 91-C and 91-R, and 20 (8.2%) resulted in amino acid changes within functional domains. Three P450 proteins were truncated as a result of premature stop codons and fixed between strains. CONCLUSION: Our results demonstrate that a combination of changes in P450 protein-coding regions and transcript levels are possibly associated with DDT resistance, and thereby suggest that selection for variant function may occur within this gene family in response to chronic DDT exposure.

Original languageEnglish (US)
Pages (from-to)2530-2543
Number of pages14
JournalPest Management Science
Volume74
Issue number11
Early online dateApr 15 2018
DOIs
StatePublished - Nov 2018

Fingerprint

DDT (pesticide)
Drosophila melanogaster
genes
amino acids
stop codon
insecticide resistance
xenobiotics
Beagle
cytochrome P-450
transposons
open reading frames
insecticides
sequence analysis
polymerase chain reaction
biosynthesis
RNA
mutation
metabolism
proteins

Keywords

  • Drosophila melanogaster
  • cytochrome P450 monooxygeneases
  • duplication
  • genome-wide evolution
  • loss-of-function mutation
  • transposable elements

ASJC Scopus subject areas

  • Agronomy and Crop Science
  • Insect Science

Cite this

Comparative CYP‐omic analysis between the DDT‐susceptible and ‐resistant Drosophila melanogaster strains 91‐C and 91‐R. / Seong, Keon Mook; Coates, Brad S.; Berenbaum, May R; Clark, John M.; Pittendrigh, Barry R.

In: Pest Management Science, Vol. 74, No. 11, 11.2018, p. 2530-2543.

Research output: Contribution to journalArticle

Seong, Keon Mook ; Coates, Brad S. ; Berenbaum, May R ; Clark, John M. ; Pittendrigh, Barry R. / Comparative CYP‐omic analysis between the DDT‐susceptible and ‐resistant Drosophila melanogaster strains 91‐C and 91‐R. In: Pest Management Science. 2018 ; Vol. 74, No. 11. pp. 2530-2543.
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