@inproceedings{43a821d6bf264536bf2467919184a36a,
title = "Codes for DNA sequence profiles",
abstract = "We consider the problem of storing information on synthetic DNA media and associated coding paradigms. The focal question of our analysis it how to construct and enumerate sequences that may be discriminated based on their collection of substrings observed through two types of noisy sequencing channels. In particular, we consider DNA sequences with balanced GC content, needed for chemical stability and desirable hybridization properties. We show that restricted de Bruijn graphs and Ehrhart theory for rational polytopes provide a suitable framework for studying such combinatorial questions.",
author = "Kiah, {Han Mao} and Puleo, {Gregory J.} and Olgica Milenkovic",
note = "Publisher Copyright: {\textcopyright} 2015 IEEE.; IEEE International Symposium on Information Theory, ISIT 2015 ; Conference date: 14-06-2015 Through 19-06-2015",
year = "2015",
month = sep,
day = "28",
doi = "10.1109/ISIT.2015.7282568",
language = "English (US)",
series = "IEEE International Symposium on Information Theory - Proceedings",
publisher = "Institute of Electrical and Electronics Engineers Inc.",
pages = "814--818",
booktitle = "Proceedings - 2015 IEEE International Symposium on Information Theory, ISIT 2015",
address = "United States",
}