Characterization of homologs of the small rna sgrs reveals diversity in function

Caryn S. Wadler, Carin K. Vanderpool

Research output: Contribution to journalArticle

Abstract

SgrS is a small RNA (sRNA) that requires the RNA chaperone Hfq for its function. SgrS is a unique dual-function sRNA with a base pairing function that regulates mRNA targets and an mRNA function that allows production of the 43-amino-acid protein SgrT. SgrS is expressed when non-metabolizable sugars accumulate intracellularly (glucose-phosphate stress) and is required to allow Escherichia coli cells to recover from stress. In this study, homologs of SgrS were used to complement an E. coli sgrS mutant in order elucidate the physiological relevance of differences among homologs. These analyses revealed that the base pairing function of E. coli and Yersinia pestis SgrS homologs is critical for rescue from glucose-phosphate stress. In contrast, base pairing-deficient SgrS homologs from Salmonella typhimurium, Erwinia carotovora and Klebsiella pneumoniae rescue E. coli cells from stress despite their failure to regulate target mRNAs. Compared with E. coli SgrS, S. typhimurium SgrS produces more SgrT and this rescues cell growth even when the base pairing function is inactivated. Genetic evidence suggests that a secondary structure in the E. coli SgrS 5' region inhibits sgrT translation. This structure is not present in S. typhimurium SgrS, which explains its higher level of SgrT production.

Original languageEnglish (US)
Article numbergkp591
Pages (from-to)5477-5485
Number of pages9
JournalNucleic acids research
Volume37
Issue number16
DOIs
StatePublished - Jul 20 2009

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RNA
Escherichia coli
Base Pairing
Salmonella typhimurium
Messenger RNA
Phosphates
Pectobacterium carotovorum
Yersinia pestis
Glucose
Klebsiella pneumoniae
Amino Acids
Growth
Proteins

ASJC Scopus subject areas

  • Genetics

Cite this

Characterization of homologs of the small rna sgrs reveals diversity in function. / Wadler, Caryn S.; Vanderpool, Carin K.

In: Nucleic acids research, Vol. 37, No. 16, gkp591, 20.07.2009, p. 5477-5485.

Research output: Contribution to journalArticle

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