Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling

AIRR Community; Johannes Trück; Anne Eugster; Pierre Barennes; Christopher M. Tipton; Eline T. Luning Prak; Davide Bagnara; Cinque Soto; Jacob S. Sherkow; Aimee S. Payne; Marie Paule Lefranc; Andrew Farmer; Magnolia Bostick; Encarnita Mariotti-Ferrandiz

doi:10.7554/eLife.66274

Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling

AIRR Community, Johannes Trück, Anne Eugster, Pierre Barennes, Christopher M. Tipton, Eline T. Luning Prak, Davide Bagnara, Cinque Soto, Jacob S. Sherkow, Aimee S. Payne, Marie Paule Lefranc, Andrew Farmer, Magnolia Bostick, Encarnita Mariotti-Ferrandiz

Research output: Contribution to journal › Article › peer-review

Abstract

Use of adaptive immune receptor repertoire sequencing (AIRR-seq) has become widespread, providing new insights into the immune system with potential broad clinical and diagnostic applications. However, like many high-throughput technologies, it comes with several problems, and the AIRR Community was established to understand and help solve them. We, the AIRR Community's Biological Resources Working Group, have surveyed scientists about the need for standards and controls in generating and annotating AIRR-seq data. Here, we review the current status of AIRR-seq, provide the results of our survey, and based on them, offer recommendations for developing AIRR-seq standards and controls, including future work.

Original language	English (US)
Article number	e66274
Journal	eLife
Volume	10
DOIs	https://doi.org/10.7554/eLife.66274
State	Published - May 26 2021

Keywords

antibody
B-cell Receptor (BCR)
IG
immunoglobulin
immunology
inflammation
next generation sequencing (NGS)
T-cell Receptor (TCR)
TR

ASJC Scopus subject areas

Neuroscience(all)
Biochemistry, Genetics and Molecular Biology(all)
Immunology and Microbiology(all)

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10.7554/eLife.66274License: CC BY

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AIRR Community, Trück, J., Eugster, A., Barennes, P., Tipton, C. M., Luning Prak, E. T., Bagnara, D., Soto, C., Sherkow, J. S., Payne, A. S., Lefranc, M. P., Farmer, A., Bostick, M., & Mariotti-Ferrandiz, E. (2021). Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling. eLife, 10, [e66274]. https://doi.org/10.7554/eLife.66274

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abstract = "Use of adaptive immune receptor repertoire sequencing (AIRR-seq) has become widespread, providing new insights into the immune system with potential broad clinical and diagnostic applications. However, like many high-throughput technologies, it comes with several problems, and the AIRR Community was established to understand and help solve them. We, the AIRR Community's Biological Resources Working Group, have surveyed scientists about the need for standards and controls in generating and annotating AIRR-seq data. Here, we review the current status of AIRR-seq, provide the results of our survey, and based on them, offer recommendations for developing AIRR-seq standards and controls, including future work.",

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year = "2021",

month = may,

day = "26",

doi = "10.7554/eLife.66274",

language = "English (US)",

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AU - AIRR Community

AU - Trück, Johannes

AU - Eugster, Anne

AU - Barennes, Pierre

AU - Tipton, Christopher M.

AU - Luning Prak, Eline T.

AU - Bagnara, Davide

AU - Soto, Cinque

AU - Sherkow, Jacob S.

AU - Payne, Aimee S.

AU - Lefranc, Marie Paule

AU - Farmer, Andrew

AU - Bostick, Magnolia

AU - Mariotti-Ferrandiz, Encarnita

PY - 2021/5/26

Y1 - 2021/5/26

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AB - Use of adaptive immune receptor repertoire sequencing (AIRR-seq) has become widespread, providing new insights into the immune system with potential broad clinical and diagnostic applications. However, like many high-throughput technologies, it comes with several problems, and the AIRR Community was established to understand and help solve them. We, the AIRR Community's Biological Resources Working Group, have surveyed scientists about the need for standards and controls in generating and annotating AIRR-seq data. Here, we review the current status of AIRR-seq, provide the results of our survey, and based on them, offer recommendations for developing AIRR-seq standards and controls, including future work.

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KW - B-cell Receptor (BCR)

KW - IG

KW - immunoglobulin

KW - immunology

KW - inflammation

KW - next generation sequencing (NGS)

KW - T-cell Receptor (TCR)

KW - TR

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Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling

Abstract

Keywords

ASJC Scopus subject areas

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