Biodiversity into your hands - A call for a virtual global natural history 'metacollection'

Michael Balke, Stefan Schmidt, Axel Hausmann, Emmanuel F.A. Toussaint, Johannes Bergsten, Matthew Buffington, Christoph L. Häuser, Alexander Kroupa, Gregor Hagedorn, Alexander Riedel, Andrew Polaszek, Rosichon Ubaidillah, Lars Krogmann, Andreas Zwick, Martin Fikáček, Jiří Hájek, Mariano C. Michat, Christopher Dietrich, John La Salle, Beth MantlePeter K.L. Ng, Donald Hobern

Research output: Contribution to journalComment/debate

Abstract

Background: Many scientific disciplines rely on correct taxon delineations and identifications. So does a great part of the general public as well as decision makers. Researchers, students and enthusiastic amateurs often feel frustrated because information about species remains scattered, difficult to access, or difficult to decipher. Together, this affects almost anyone who wishes to identify species or verify identifications. Many remedies have been proposed, but we argue that the role of natural history collections remains insufficiently appreciated. We suggest using state-of-the-art mass imaging technology and to join forces to create a global natural history metacollection on the internet, providing access to the morphology of tens of millions of specimens and making them available for automated digital image analysis.Discussion: Robotic high-resolution imaging technology and fast (high performance) computer-based image stitching make it now feasible to digitize entire collection drawers typically used for arthropod collections, or trays or containers used for other objects. Resolutions of 500 megapixels and much higher are already utilized to capture the contents of 40x50 cm collection drawers, providing amazing detail of specimens. Flanked by metadata entry, this helps to create access to tens of thousands of specimens in days. By setting priorities and combining the holdings of the most comprehensive collections for certain taxa, drawer digitizing offers the unique opportunity to create a global, virtual metacollection.The taxonomic and geographic coverage of such a collection could never be achieved by a single institution or individual. We argue that by joining forces, many new impulses will emerge for systematic biology, related fields and understanding of biodiversity in general.Digitizing drawers containing unidentified, little-curated specimens is a contribution towards the beginning of a new era of online curation. It also will help taxonomists and curators to discover and process the millions of " gems" of undescribed species hidden in museum accessions.Summary: Our proposal suggests creating virtual, high-resolution image resources that will, for the first time in history, provide access for expert scientists as well as students and the general public to the enormous wealth of the world's natural history collections. We foresee that this will contribute to a better understanding, appreciation and increased use of biodiversity resources and the natural history collections serving this cause.

Original languageEnglish (US)
Article number55
JournalFrontiers in Zoology
Volume10
Issue number1
DOIs
StatePublished - Sep 17 2013

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natural history
hands
biodiversity
image analysis
history
students
student
application coverage
digital images
trays
metadata
containers
arthropods
robotics
image resolution
resource
digital image
researchers
arthropod
museum

Keywords

  • Accessions
  • Collection access
  • Cybertaxonomy
  • DNA extraction vouchers
  • Mass digitization
  • Metacollection
  • Natural history collections
  • Online resources
  • Robotic imaging

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Animal Science and Zoology

Cite this

Balke, M., Schmidt, S., Hausmann, A., Toussaint, E. F. A., Bergsten, J., Buffington, M., ... Hobern, D. (2013). Biodiversity into your hands - A call for a virtual global natural history 'metacollection'. Frontiers in Zoology, 10(1), [55]. https://doi.org/10.1186/1742-9994-10-55

Biodiversity into your hands - A call for a virtual global natural history 'metacollection'. / Balke, Michael; Schmidt, Stefan; Hausmann, Axel; Toussaint, Emmanuel F.A.; Bergsten, Johannes; Buffington, Matthew; Häuser, Christoph L.; Kroupa, Alexander; Hagedorn, Gregor; Riedel, Alexander; Polaszek, Andrew; Ubaidillah, Rosichon; Krogmann, Lars; Zwick, Andreas; Fikáček, Martin; Hájek, Jiří; Michat, Mariano C.; Dietrich, Christopher; La Salle, John; Mantle, Beth; Ng, Peter K.L.; Hobern, Donald.

In: Frontiers in Zoology, Vol. 10, No. 1, 55, 17.09.2013.

Research output: Contribution to journalComment/debate

Balke, M, Schmidt, S, Hausmann, A, Toussaint, EFA, Bergsten, J, Buffington, M, Häuser, CL, Kroupa, A, Hagedorn, G, Riedel, A, Polaszek, A, Ubaidillah, R, Krogmann, L, Zwick, A, Fikáček, M, Hájek, J, Michat, MC, Dietrich, C, La Salle, J, Mantle, B, Ng, PKL & Hobern, D 2013, 'Biodiversity into your hands - A call for a virtual global natural history 'metacollection'', Frontiers in Zoology, vol. 10, no. 1, 55. https://doi.org/10.1186/1742-9994-10-55
Balke M, Schmidt S, Hausmann A, Toussaint EFA, Bergsten J, Buffington M et al. Biodiversity into your hands - A call for a virtual global natural history 'metacollection'. Frontiers in Zoology. 2013 Sep 17;10(1). 55. https://doi.org/10.1186/1742-9994-10-55
Balke, Michael ; Schmidt, Stefan ; Hausmann, Axel ; Toussaint, Emmanuel F.A. ; Bergsten, Johannes ; Buffington, Matthew ; Häuser, Christoph L. ; Kroupa, Alexander ; Hagedorn, Gregor ; Riedel, Alexander ; Polaszek, Andrew ; Ubaidillah, Rosichon ; Krogmann, Lars ; Zwick, Andreas ; Fikáček, Martin ; Hájek, Jiří ; Michat, Mariano C. ; Dietrich, Christopher ; La Salle, John ; Mantle, Beth ; Ng, Peter K.L. ; Hobern, Donald. / Biodiversity into your hands - A call for a virtual global natural history 'metacollection'. In: Frontiers in Zoology. 2013 ; Vol. 10, No. 1.
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T1 - Biodiversity into your hands - A call for a virtual global natural history 'metacollection'

AU - Balke, Michael

AU - Schmidt, Stefan

AU - Hausmann, Axel

AU - Toussaint, Emmanuel F.A.

AU - Bergsten, Johannes

AU - Buffington, Matthew

AU - Häuser, Christoph L.

AU - Kroupa, Alexander

AU - Hagedorn, Gregor

AU - Riedel, Alexander

AU - Polaszek, Andrew

AU - Ubaidillah, Rosichon

AU - Krogmann, Lars

AU - Zwick, Andreas

AU - Fikáček, Martin

AU - Hájek, Jiří

AU - Michat, Mariano C.

AU - Dietrich, Christopher

AU - La Salle, John

AU - Mantle, Beth

AU - Ng, Peter K.L.

AU - Hobern, Donald

PY - 2013/9/17

Y1 - 2013/9/17

N2 - Background: Many scientific disciplines rely on correct taxon delineations and identifications. So does a great part of the general public as well as decision makers. Researchers, students and enthusiastic amateurs often feel frustrated because information about species remains scattered, difficult to access, or difficult to decipher. Together, this affects almost anyone who wishes to identify species or verify identifications. Many remedies have been proposed, but we argue that the role of natural history collections remains insufficiently appreciated. We suggest using state-of-the-art mass imaging technology and to join forces to create a global natural history metacollection on the internet, providing access to the morphology of tens of millions of specimens and making them available for automated digital image analysis.Discussion: Robotic high-resolution imaging technology and fast (high performance) computer-based image stitching make it now feasible to digitize entire collection drawers typically used for arthropod collections, or trays or containers used for other objects. Resolutions of 500 megapixels and much higher are already utilized to capture the contents of 40x50 cm collection drawers, providing amazing detail of specimens. Flanked by metadata entry, this helps to create access to tens of thousands of specimens in days. By setting priorities and combining the holdings of the most comprehensive collections for certain taxa, drawer digitizing offers the unique opportunity to create a global, virtual metacollection.The taxonomic and geographic coverage of such a collection could never be achieved by a single institution or individual. We argue that by joining forces, many new impulses will emerge for systematic biology, related fields and understanding of biodiversity in general.Digitizing drawers containing unidentified, little-curated specimens is a contribution towards the beginning of a new era of online curation. It also will help taxonomists and curators to discover and process the millions of " gems" of undescribed species hidden in museum accessions.Summary: Our proposal suggests creating virtual, high-resolution image resources that will, for the first time in history, provide access for expert scientists as well as students and the general public to the enormous wealth of the world's natural history collections. We foresee that this will contribute to a better understanding, appreciation and increased use of biodiversity resources and the natural history collections serving this cause.

AB - Background: Many scientific disciplines rely on correct taxon delineations and identifications. So does a great part of the general public as well as decision makers. Researchers, students and enthusiastic amateurs often feel frustrated because information about species remains scattered, difficult to access, or difficult to decipher. Together, this affects almost anyone who wishes to identify species or verify identifications. Many remedies have been proposed, but we argue that the role of natural history collections remains insufficiently appreciated. We suggest using state-of-the-art mass imaging technology and to join forces to create a global natural history metacollection on the internet, providing access to the morphology of tens of millions of specimens and making them available for automated digital image analysis.Discussion: Robotic high-resolution imaging technology and fast (high performance) computer-based image stitching make it now feasible to digitize entire collection drawers typically used for arthropod collections, or trays or containers used for other objects. Resolutions of 500 megapixels and much higher are already utilized to capture the contents of 40x50 cm collection drawers, providing amazing detail of specimens. Flanked by metadata entry, this helps to create access to tens of thousands of specimens in days. By setting priorities and combining the holdings of the most comprehensive collections for certain taxa, drawer digitizing offers the unique opportunity to create a global, virtual metacollection.The taxonomic and geographic coverage of such a collection could never be achieved by a single institution or individual. We argue that by joining forces, many new impulses will emerge for systematic biology, related fields and understanding of biodiversity in general.Digitizing drawers containing unidentified, little-curated specimens is a contribution towards the beginning of a new era of online curation. It also will help taxonomists and curators to discover and process the millions of " gems" of undescribed species hidden in museum accessions.Summary: Our proposal suggests creating virtual, high-resolution image resources that will, for the first time in history, provide access for expert scientists as well as students and the general public to the enormous wealth of the world's natural history collections. We foresee that this will contribute to a better understanding, appreciation and increased use of biodiversity resources and the natural history collections serving this cause.

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KW - Cybertaxonomy

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KW - Online resources

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