Bayesian functional data clustering for temporal microarray data

Ping Ma, Wenxuan Zhong, Yang Feng, Jun S. Liu

Research output: Contribution to journalArticlepeer-review

Abstract

We propose a Bayesian procedure to cluster temporal gene expression microarray profiles, based on a mixed-effect smoothing-spline model, and design a Gibbs sampler to sample from the desired posterior distribution. Our method can determine the cluster number automatically based on the Bayesian information criterion, and handle missing data easily. When applied to a microarray dataset on the budding yeast, our clustering algorithm provides biologically meaningful gene clusters according to a functional enrichment analysis. Copyright _ 2008.

Original languageEnglish (US)
Article number231897
JournalInternational Journal of Plant Genomics
Volume2008
DOIs
StatePublished - 2008

ASJC Scopus subject areas

  • Genetics
  • Plant Science

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