TY - JOUR
T1 - AOC
T2 - Assembling overlapping communities
AU - Jakatdar, Akhil
AU - Liu, Baqiao
AU - Warnow, Tandy
AU - Chacko, George
N1 - TW receives funding from the Grainger Foundation. Research reported in this manuscript was supported by the Google Cloud Research Credits program through award GCP19980904 to GC.
We thank two anonymous reviewers for their constructive critique. AJ is presently in the graduate program at Princeton University; his contributions to this manuscript were made while he was a computer science major at the University of Illinois Urbana-Champaign. We thank Srijan Sengupta from North Carolina State University for critical advice. We thank Alison Abritis and Ivan Oransky from Retraction Watch for making data available and for helpful comments. We thank Digital Science, Google, and the Grainger Foundation.TW receives funding from the Grainger Foundation. Research reported in this manuscript was supported by the Google Cloud Research Credits program through award GCP19980904 to GC.
PY - 2022/9/1
Y1 - 2022/9/1
N2 - Through discovery of mesoscale structures, community detection methods contribute to the understanding of complex networks. Many community finding methods, however, rely on disjoint clustering techniques, in which node membership is restricted to one community or cluster. This strict requirement limits the ability to inclusively describe communities because some nodes may reasonably be assigned to multiple communities. We have previously reported Iterative K-core Clustering, a scalable and modular pipeline that discovers disjoint research communities from the scientific literature. We now present Assembling Overlapping Clusters (AOC), a complementary metamethod for overlapping communities, as an option that addresses the disjoint clustering problem. We present findings from the use of AOC on a network of over 13 million nodes that captures recent research in the very rapidly growing field of extracellular vesicles in biology.
AB - Through discovery of mesoscale structures, community detection methods contribute to the understanding of complex networks. Many community finding methods, however, rely on disjoint clustering techniques, in which node membership is restricted to one community or cluster. This strict requirement limits the ability to inclusively describe communities because some nodes may reasonably be assigned to multiple communities. We have previously reported Iterative K-core Clustering, a scalable and modular pipeline that discovers disjoint research communities from the scientific literature. We now present Assembling Overlapping Clusters (AOC), a complementary metamethod for overlapping communities, as an option that addresses the disjoint clustering problem. We present findings from the use of AOC on a network of over 13 million nodes that captures recent research in the very rapidly growing field of extracellular vesicles in biology.
UR - https://www.scopus.com/pages/publications/85148109092
UR - https://www.scopus.com/pages/publications/85148109092#tab=citedBy
U2 - 10.1162/qss_a_00227
DO - 10.1162/qss_a_00227
M3 - Article
AN - SCOPUS:85148109092
SN - 2641-3337
VL - 3
SP - 1079
EP - 1096
JO - Quantitative Science Studies
JF - Quantitative Science Studies
IS - 4
ER -