ANTs, BET, or...neither? An exploration of brain masking and machine learning tools applied to magnetic resonance elastography

John D. Squire, Aaron T. Anderson, Curtis L. Johnson, Brad Sutton

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Magnetic resonance elastography is a quantitative MRI modality that can aid in diagnosis of disease by detecting altered tissue mechanical properties. While brain masking tools exist for common MRI sequences, such as T1-weighted and T2-weighted imaging, there is no reliable masking tool for MRE. In this research, our innovation involves applying machine learning methods to a problem where no existing tools exist within the MRE research space. The demonstrated machine learning model shows potential for improvement in masking out distorted regions in brain elastography when compared to current non-machine learning masking methods not meant for MRE. This tool will enable automated and reproducible MRE results for neuroimaging applications.

Original languageEnglish (US)
Title of host publication46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2024 - Proceedings
PublisherInstitute of Electrical and Electronics Engineers Inc.
ISBN (Electronic)9798350371499
DOIs
StatePublished - 2024
Event46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2024 - Orlando, United States
Duration: Jul 15 2024Jul 19 2024

Publication series

NameProceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS
ISSN (Print)1557-170X

Conference

Conference46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2024
Country/TerritoryUnited States
CityOrlando
Period7/15/247/19/24

Keywords

  • Advanced Normalization Tools (ANTs)
  • Brain Extraction Tool (BET)
  • Machine learning
  • Magnetic resonance elastography (MRE)
  • TorchIO

ASJC Scopus subject areas

  • Signal Processing
  • Biomedical Engineering
  • Computer Vision and Pattern Recognition
  • Health Informatics

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