TY - JOUR
T1 - Activation Mechanism of Strigolactone Receptors and Its Impact on Ligand Selectivity between Host and Parasitic Plants
AU - Chen, Jiming
AU - Nelson, David C.
AU - Shukla, Diwakar
N1 - Funding Information:
This research is part of the Blue Waters sustained-petascale computing project, which is supported by the National Science Foundation (Award Nos. OCI-0725070 and ACI-1238993), the State of Illinois, and, as of December 2019, the National Geospatial-Intelligence Agency. Blue Waters is a joint effort of the University of Illinois at Urbana–Champaign and its National Center for Supercomputing Applications. J.C. is a member of the NIH Chemistry-Biology Interface Training Program (T32-GM136629). D.S. acknowledges support from the CAS Fellowship, Center for Advanced Studies at University of Illinois at Urbana–Champaign, and a Sloan Research Fellowship from the Alfred P. Sloan Foundation.
Funding Information:
This research is part of the Blue Waters sustained-petascale computing project, which is supported by the National Science Foundation (Award Nos. OCI-0725070 and ACI-1238993), the State of Illinois, and as of December 2019, the National Geospatial-Intelligence Agency. Blue Waters is a joint effort of the University of Illinois at Urbana–Champaign and its National Center for Supercomputing Applications. J.C. is a member of the NIH Chemistry-Biology Interface Training Program (T32-GM136629). D.S. acknowledges support from the CAS Fellowship, Center for Advanced Studies at University of Illinois at Urbana–Champaign, and a Sloan Research Fellowship from the Alfred P. Sloan Foundation.
Publisher Copyright:
© 2022 American Chemical Society. All rights reserved.
PY - 2022/4/11
Y1 - 2022/4/11
N2 - Parasitic weeds such as Striga have led to significant losses in agricultural productivity worldwide. These weeds use the plant hormone strigolactone as a germination stimulant. Strigolactone signaling involves substrate hydrolysis followed by a conformational change of the receptor to a "closed" or "active" state that associates with a signaling partner, MAX2/D3. Crystal structures of active and inactive AtD14 receptors have helped elucidate the structural changes involved in activation. However, the mechanism by which the receptor activates remains unknown. The ligand dependence of AtD14 activation has been disputed by mutagenesis studies showing that enzymatically inactive receptors are able to associate with MAX2 proteins. Furthermore, activation differences between strigolactone receptor in Striga, ShHTL7, and AtD14 could contribute to the high sensitivity to strigolactones exhibited by parasitic plants. Using molecular dynamics simulations, we demonstrate that both AtD14 and ShHTL7 could adopt an active conformation in the absence of ligand. However, ShHTL7 exhibits a higher population in the inactive apo state as compared to the AtD14 receptor. We demonstrate that this difference in inactive state population is caused by sequence differences between their D-loops and interactions with the catalytic histidine that prevent full binding pocket closure in ShHTL7. These results indicate that ligand hydrolysis would enhance the active state population by destabilizing the inactive state in ShHTL7 as compared to AtD14. We also show that the mechanism of activation is more concerted in AtD14 than in ShHTL7 and that the main barrier to activation in ShHTL7 is closing of the binding pocket.
AB - Parasitic weeds such as Striga have led to significant losses in agricultural productivity worldwide. These weeds use the plant hormone strigolactone as a germination stimulant. Strigolactone signaling involves substrate hydrolysis followed by a conformational change of the receptor to a "closed" or "active" state that associates with a signaling partner, MAX2/D3. Crystal structures of active and inactive AtD14 receptors have helped elucidate the structural changes involved in activation. However, the mechanism by which the receptor activates remains unknown. The ligand dependence of AtD14 activation has been disputed by mutagenesis studies showing that enzymatically inactive receptors are able to associate with MAX2 proteins. Furthermore, activation differences between strigolactone receptor in Striga, ShHTL7, and AtD14 could contribute to the high sensitivity to strigolactones exhibited by parasitic plants. Using molecular dynamics simulations, we demonstrate that both AtD14 and ShHTL7 could adopt an active conformation in the absence of ligand. However, ShHTL7 exhibits a higher population in the inactive apo state as compared to the AtD14 receptor. We demonstrate that this difference in inactive state population is caused by sequence differences between their D-loops and interactions with the catalytic histidine that prevent full binding pocket closure in ShHTL7. These results indicate that ligand hydrolysis would enhance the active state population by destabilizing the inactive state in ShHTL7 as compared to AtD14. We also show that the mechanism of activation is more concerted in AtD14 than in ShHTL7 and that the main barrier to activation in ShHTL7 is closing of the binding pocket.
UR - http://www.scopus.com/inward/record.url?scp=85125941219&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85125941219&partnerID=8YFLogxK
U2 - 10.1021/acs.jcim.1c01258
DO - 10.1021/acs.jcim.1c01258
M3 - Article
C2 - 35192364
AN - SCOPUS:85125941219
SN - 0095-2338
VL - 62
SP - 1712
EP - 1722
JO - Journal of Chemical Information and Computer Sciences
JF - Journal of Chemical Information and Computer Sciences
IS - 7
ER -