AC-DC: Amplification Curve Diagnostics for Covid-19 Group Testing

Ryan Gabrys, Srilakshmi Pattabiraman, Vishal Rana, João Ribeiro, Mahdi Cheraghchi, Venkatesan Guruswami, Olgica Milenkovic

Research output: Working paper

Abstract

The first part of the paper presents a review of the gold-standard testing protocol for Covid-19, real-time, reverse transcriptase PCR, and its properties and associated measurement data such as amplification curves that can guide the development of appropriate and accurate adaptive group testing protocols. The second part of the paper is concerned with examining various off-the-shelf group testing methods for Covid-19 and identifying their strengths and weaknesses for the application at hand. The third part of the paper contains a collection of new analytical results for adaptive semiquantitative group testing with probabilistic and combinatorial priors, including performance bounds, algorithmic solutions, and noisy testing protocols. The probabilistic setting is of special importance as it is designed to be simple to implement by nonexperts and handle heavy hitters. The worst-case paradigm extends and improves upon prior work on semiquantitative group testing with and without specialized PCR noise models.
Original languageEnglish (US)
StateIn preparation - Nov 10 2020

Publication series

NamearXiv:2011.05223

Keywords

  • q-bio.QM
  • stat.ME
  • COVID-19
  • severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
  • Pandemic

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