A reusable laser wrapped graphene-Ag array based SERS sensor for trace detection of genomic DNA methylation

Lei Ouyang, Yaowu Hu, Lihua Zhu, Gary J. Cheng, Joseph Maria Kumar Irudayaraj

Research output: Contribution to journalArticle

Abstract

Methylation is an important epigenetic DNA modification that governs gene expression. The genomic level of methylated DNA and its derivatives may serve as important indicators for the initiation and progression of cancers among other diseases. In this effort we propose a new laser wrapped graphene-Ag array as a highly sensitive Surface-enhanced Raman spectroscopy (SERS) sensor for the detection of methylated DNA (5-methylcytosine, 5 mC) and its oxidation derivatives namely 5-hydroxymethylcytosine (5-hmC) and 5-carboxylcytosine (5-caC). Excellent sensitivity and reproducibility were achieved with the laser wrapped graphene-Ag array as a substrate, with the graphene layer acting as an enhancer of the SERS signal due to the effective coupling of the electromagnetic field. In summary, fast (less than 60 min) and sensitive (at a limit of detection 0.2 pg μL−1, ie. 1.8 pmol L−1) detection of methylated DNA and its derivatives was realized with the ability to distinguish methylation levels from a mixture at 0.1%. The sensitive and accurate detection in DNA extracted from cells was also accomplished. Furthermore our graphene wrapped approach circumvents the direct interaction between Ag array and the analytes, thus improving the reusability of the SERS substrate even after five cycles of use.

Original languageEnglish (US)
Pages (from-to)755-762
Number of pages8
JournalBiosensors and Bioelectronics
Volume92
DOIs
StatePublished - Jun 15 2017
Externally publishedYes

Fingerprint

Graphite
Raman Spectrum Analysis
DNA Methylation
Graphene
Raman spectroscopy
Lasers
DNA
Sensors
Methylation
Derivatives
5-Methylcytosine
Electromagnetic Fields
Reusability
Substrates
Epigenomics
Gene expression
Electromagnetic fields
Limit of Detection
Gene Expression
Oxidation

Keywords

  • DNA methylation
  • Graphene-Ag array
  • Laser wrapping
  • SERS

ASJC Scopus subject areas

  • Biotechnology
  • Biophysics
  • Biomedical Engineering
  • Electrochemistry

Cite this

A reusable laser wrapped graphene-Ag array based SERS sensor for trace detection of genomic DNA methylation. / Ouyang, Lei; Hu, Yaowu; Zhu, Lihua; Cheng, Gary J.; Irudayaraj, Joseph Maria Kumar.

In: Biosensors and Bioelectronics, Vol. 92, 15.06.2017, p. 755-762.

Research output: Contribution to journalArticle

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