Abstract
We provide a theoretical analysis of the communication requirements of parallel algorithms for molecular dynamic simulations. We describe two commonly used algorithms, space decomposition and force decomposition, and analyze their communication requirements; each is better in a distinct computation regime. We next introduce a new hybrid algorithm that further reduces communication. We show that the new algorithm is optimal, by providing a matching lower bound.
Original language | English (US) |
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Pages (from-to) | 295-318 |
Number of pages | 24 |
Journal | Theory of Computing Systems |
Volume | 37 |
Issue number | 2 |
DOIs | |
State | Published - 2004 |
ASJC Scopus subject areas
- Theoretical Computer Science
- Computational Theory and Mathematics