TY - JOUR
T1 - A methodology for extending domain coverage in SemRep
AU - Rosemblat, Graciela
AU - Shin, Dongwook
AU - Kilicoglu, Halil
AU - Sneiderman, Charles
AU - Rindflesch, Thomas C.
N1 - Funding Information:
This study was supported by the Intramural Research Program of the National Institutes of Health, National Library of Medicine.
PY - 2013/12
Y1 - 2013/12
N2 - We describe a domain-independent methodology to extend SemRep coverage beyond the biomedical domain. SemRep, a natural language processing application originally designed for biomedical texts, uses the knowledge sources provided by the Unified Medical Language System (UMLS©). Ontological and terminological extensions to the system are needed in order to support other areas of knowledge. We extended SemRep's application by developing a semantic representation of a previously unsupported domain. This was achieved by adapting well-known ontology engineering phases and integrating them with the UMLS knowledge sources on which SemRep crucially depends. While the process to extend SemRep coverage has been successfully applied in earlier projects, this paper presents in detail the step-wise approach we followed and the mechanisms implemented. A case study in the field of medical informatics illustrates how the ontology engineering phases have been adapted for optimal integration with the UMLS. We provide qualitative and quantitative results, which indicate the validity and usefulness of our methodology.
AB - We describe a domain-independent methodology to extend SemRep coverage beyond the biomedical domain. SemRep, a natural language processing application originally designed for biomedical texts, uses the knowledge sources provided by the Unified Medical Language System (UMLS©). Ontological and terminological extensions to the system are needed in order to support other areas of knowledge. We extended SemRep's application by developing a semantic representation of a previously unsupported domain. This was achieved by adapting well-known ontology engineering phases and integrating them with the UMLS knowledge sources on which SemRep crucially depends. While the process to extend SemRep coverage has been successfully applied in earlier projects, this paper presents in detail the step-wise approach we followed and the mechanisms implemented. A case study in the field of medical informatics illustrates how the ontology engineering phases have been adapted for optimal integration with the UMLS. We provide qualitative and quantitative results, which indicate the validity and usefulness of our methodology.
KW - Domain-independent ontology development methodology
KW - Natural language processing application
KW - Semantic predications
KW - UMLS knowledge sources
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U2 - 10.1016/j.jbi.2013.08.005
DO - 10.1016/j.jbi.2013.08.005
M3 - Article
C2 - 23973273
AN - SCOPUS:84888200704
SN - 1532-0464
VL - 46
SP - 1099
EP - 1107
JO - Journal of Biomedical Informatics
JF - Journal of Biomedical Informatics
IS - 6
ER -