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2011

Biomarker motif discovery by integrating mass spectrometry and PPI network

Zhou, X., Wang, Y., Wang, H., Pham, T. D. & Li, K., Jul 13 2011, 2011 International Symposium on Computational Models for Life Sciences, CMLS-11. p. 225-233 9 p. (AIP Conference Proceedings; vol. 1371).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference

Chen, G., Cairelli, M. J., Kilicoglu, H., Shin, D. & Rindflesch, T. C., Jun 2014, In : PLoS computational biology. 10, 6, e1003666.

Research output: Contribution to journalArticle

Open Access
1996

Data mining: An overview from a database perspective

Chen, M. S., Han, J. & Yu, P. S., Dec 1 1996, In : IEEE Transactions on Knowledge and Data Engineering. 8, 6, p. 866-883 18 p.

Research output: Contribution to journalReview article

2016

Liberal event extraction and event schema induction

Huang, L., Cassidy, T., Feng, X., Ji, H., Voss, C. R., Han, J. & Sil, A., Jan 1 2016, 54th Annual Meeting of the Association for Computational Linguistics, ACL 2016 - Long Papers. Association for Computational Linguistics (ACL), p. 258-268 11 p. (54th Annual Meeting of the Association for Computational Linguistics, ACL 2016 - Long Papers; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2005

Subleading-twist effects in single-spin asymmetries in semi-inclusive deep-inelastic scattering on a longitudinally polarized hydrogen target

Airapetian, A., Akopov, N., Akopov, Z., Amarian, M., Andrus, A., Aschenauer, E. C., Augustyniak, W., Avakian, R., Avetissian, A., Avetissian, E., Bacchetta, A., Bailey, P., Balin, D., Beckmann, M., Belostotski, S., Bianchi, N., Blok, H. P., Böttcher, H., Borissov, A., Borysenko, A. & 152 others, Bouwhuis, M., Brüll, A., Bryzgalov, V., Capiluppi, M., Capitani, G. P., Chen, T., Ciullo, G., Contalbrigo, M., Dalpiaz, P. F., Deconinck, W., De Leo, R., Demey, M., De Nardo, L., De Sanctis, E., Devitsin, E., Diefenthaler, M., Di Nezza, P., Dreschler, J., Düren, M., Ehrenfried, M., Elalaoui-Moulay, A., Elbakian, G., Ellinghaus, F., Elschenbroich, U., Fabbri, R., Fantoni, A., Felawka, L., Frullani, S., Funel, A., Gapienko, G., Gapienko, V., Garibaldi, F., Garrow, K., Gavrilov, G., Gharibyan, V., Grebeniouk, O., Gregor, I. M., Hadjidakis, C., Hafidi, K., Hartig, M., Hasch, D., Hesselink, W. H. A., Hillenbrand, A., Hoek, M., Holler, Y., Hommez, B., Hristova, I., Iarygin, G., Ivanilov, A., Izotov, A., Jackson, H. E., Jgoun, A., Kaiser, R., Keri, T., Kinney, E., Kisselev, A., Kobayashi, T., Kopytin, M., Korotkov, V., Kozlov, V., Krauss, B., Krivokhijine, V. G., Lagamba, L., Lapikás, L., Laziev, A., Lenisa, P., Liebing, P., Linden-Levy, L. A., Lorenzon, W., Lu, H., Lu, J., Lu, S., Ma, B. Q., Maiheu, B., Makins, N. C. R., Mao, Y., Marianski, B., Marukyan, H., Masoli, F., Mexner, V., Meyners, N., Michler, T., Mikloukho, O., Miller, C. A., Miyachi, Y., Muccifora, V., Murray, M., Nagaitsev, A., Nappi, E., Naryshkin, Y., Negodaev, M., Nowak, W. D., Oganessyan, K., Ohsuga, H., Osborne, A., Pickert, N., Potterveld, D. H., Raithel, M., Reggiani, D., Reimer, P. E., Reischl, A., Reolon, A. R., Riedl, C., Rith, K., Rosner, G., Rostomyan, A., Rubacek, L., Rubin, J., Ryckbosch, D., Salomatin, Y., Sanjiev, I., Savin, I., Schäfer, A., Schnell, G., Schüler, K. P., Seele, J., Seidl, R., Seitz, B., Shearer, C., Shibata, T. A., Shutov, V., Sinram, K., Sommer, W., Stancari, M., Statera, M., Steffens, E., Steijger, J. J. M., Stenzel, H., Stewart, J., Stinzing, F., Tait, P., Tanaka, H., Taroian, S., Tchuiko, B., Terkulov, A., Trzcinski, A., Tytgat, M., Vandenbroucke, A., Van Der Nat, P. B., Van Der Steenhoven, G., Van Haarlem, Y., Vikhrov, V., Vincter, M. G., Vogel, C., Volmer, J., Wang, S., Wendland, J., Ye, Y., Ye, Z., Yen, S., Zihlmann, B. & Zupranski, P., Aug 25 2005, In : Physics Letters, Section B: Nuclear, Elementary Particle and High-Energy Physics. 622, 1-2, p. 14-22 9 p.

Research output: Contribution to journalArticle

2019

DeepStore: In-storage acceleration for intelligent queries

Mailthody, V. S., Qureshi, Z., Liang, W., Feng, Z., Gonzalo, S. G. D., Li, Y., Franke, H., Xiong, J., Huang, J. & Hwu, W. M., Oct 12 2019, MICRO 2019 - 52nd Annual IEEE/ACM International Symposium on Microarchitecture, Proceedings. IEEE Computer Society, p. 224-238 15 p. (Proceedings of the Annual International Symposium on Microarchitecture, MICRO).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1992

Using Visualization Tools to Understand Concurrency

Zernik, D., Snir, M. & Malki, D., May 1992, In : IEEE Software. 9, 3, p. 87-92 6 p.

Research output: Contribution to journalArticle

2014

Demonstration of self-aligned flip-chip photonic assembly with 1.1dB loss and > 120nm bandwidth

Barwicz, T., Martin, Y., Nah, J. W., Kamlapurkar, S., Bruce, R. L., Engelmann, S. & Vlasov, Y. A., Jul 21 2014, Frontiers in Optics, FiO 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2006

Self-phase-modulation in submicron silicon-on-insulator photonic wires

Dulkeith, E., Vlasov, Y. A., Chen, X., Panoiu, N. C. & Osgood, R. M., Jan 1 2006, In : Optics Express. 14, 12, p. 5524-5534 11 p.

Research output: Contribution to journalArticle

2011

On the achievable throughput of CSMA under imperfect carrier sensing

Kim, T. H., Ni, J., Srikant, R. & Vaidya, N. H., Aug 2 2011, 2011 Proceedings IEEE INFOCOM. p. 1674-1682 9 p. 5934962. (Proceedings - IEEE INFOCOM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Information spreading in context

Wang, D., Wen, Z., Tong, H., Lin, C. Y., Song, C. & Barabási, A. L., Dec 1 2011, Proceedings of the 20th International Conference on World Wide Web, WWW 2011. p. 735-744 10 p. (Proceedings of the 20th International Conference on World Wide Web, WWW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2010

Top-K aggregation queries over large networks

Yan, X., He, B., Zhu, F. & Han, J., Jun 1 2010, 26th IEEE International Conference on Data Engineering, ICDE 2010 - Conference Proceedings. p. 377-380 4 p. 5447863. (Proceedings - International Conference on Data Engineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Learning from multi-modality multi-resolution data: An optimization approach

Zhu, Y., Li, J. & He, J., Jan 1 2017, Proceedings of the 17th SIAM International Conference on Data Mining, SDM 2017. Chawla, N. & Wang, W. (eds.). Society for Industrial and Applied Mathematics Publications, p. 714-722 9 p. (Proceedings of the 17th SIAM International Conference on Data Mining, SDM 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2007

GraphScope: Parameter-free mining of large time-evolving graphs

Sun, J., Faloutsos, C., Papadimitriou, S. & Yu, P. S., Dec 14 2007, KDD-2007: Proceedings of the Thirteenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. p. 687-696 10 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

Automatic identification of heart failure diagnostic criteria, using text analysis of clinical notes from electronic health records

Byrd, R. J., Steinhubl, S. R., Sun, J., Ebadollahi, S. & Stewart, W. F., Dec 1 2014, In : International Journal of Medical Informatics. 83, 12, p. 983-992 10 p.

Research output: Contribution to journalArticle

2015

VM-μcheckpoint: Design, modeling, and assessment of lightweight in-memory VM checkpointing

Wang, L., Kalbarczyk, Z., Iyer, R. K. & Iyengar, A., Mar 1 2015, In : IEEE Transactions on Dependable and Secure Computing. 12, 2, p. 243-255 13 p., 6824750.

Research output: Contribution to journalArticle

2004

Noise characterization of static CMOS gates

Kanj, R., Lehner, T., Agrawal, B. & Rosenbaum, E., Sep 20 2004, In : Proceedings - Design Automation Conference. p. 888-893 6 p.

Research output: Contribution to journalConference article

2007

"Arsenals of scientific and technical information": Public Technical Libraries in Britain during and immediately after World War I

Black, A., Jan 1 2007, In : Library Trends. 55, 3, p. 474-489 16 p.

Research output: Contribution to journalReview article

2019

Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion

Wang, X., Zhang, Y., Li, Q., Ren, X., Shang, J. & Han, J., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 496-503 8 p. 8983212. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1987

Thermal conductivity of amorphous solids above the plateau

Cahill, D. G. & Pohl, R. O., Jan 1 1987, In : Physical Review B. 35, 8, p. 4067-4073 7 p.

Research output: Contribution to journalArticle

1997

High-frequency modulation characteristics of red VCSELs

Lehman, J. A., Morgan, R. A., Carlson, D., Hagerott Crawford, M. & Choquette, K. D., Feb 13 1997, In : Electronics Letters. 33, 4, p. 298-300 3 p.

Research output: Contribution to journalArticle

2012

Porosity control in metal-assisted chemical etching of degenerately doped silicon nanowires

Balasundaram, K., Sadhu, J. S., Shin, J. C., Azeredo, B., Chanda, D., Malik, M., Hsu, K., Rogers, J. A., Ferreira, P., Sinha, S. & Li, X., Aug 3 2012, In : Nanotechnology. 23, 30, 305304.

Research output: Contribution to journalArticle

2013

Experimental blast testing of a large 9-story structure equipped with a system of nonlinear energy sinks

Wierschem, N. E., Hubbard, S. A., Luo, J., Fahnestock, L. A., Spencer, B. F., Quinn, D. D., McFarland, D. M., Vakakis, A. F. & Bergman, L., Jan 1 2013, 22nd Reliability, Stress Analysis, and Failure Prevention Conference; 25th Conference on Mechanical Vibration and Noise. American Society of Mechanical Engineers, (Proceedings of the ASME Design Engineering Technical Conference; vol. 8).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Wavelet-bounded empirical mode decomposition for vibro-impact analysis

Moore, K. J., Kurt, M., Eriten, M., McFarland, D. M., Bergman, L. & Vakakis, A. F., Aug 1 2018, In : Nonlinear Dynamics. 93, 3, p. 1559-1577 19 p.

Research output: Contribution to journalArticle

2014

Turbulence within variable-size wind turbine arrays

Chamorro, L. P., Arndt, R. E. A. & Sotiropoulos, F., Jan 1 2014, In : Journal of Physics: Conference Series. 555, 1, 012098.

Research output: Contribution to journalConference article

2001

Two-dimensional 8 × 8 photoreceiver array and VCSEL drivers for high-throughput optical data links

Hietala, V. M., Chun, C., Laskar, J., Choquette, K. D., Geib, K. M., Allerman, A. A. & Hindi, J. J., Sep 2001, In : IEEE Journal of Solid-State Circuits. 36, 9, p. 1297-1302 6 p.

Research output: Contribution to journalArticle

1995

Microcavity Vacuum-Field Configuration and the Spontaneous Emission Power

Zhang, T., Wohlbier, J. G., Tabatabaie, N. & Choquette, K. D., Jun 1995, In : IEEE Journal on Selected Topics in Quantum Electronics. 1, 2, p. 606-615 10 p.

Research output: Contribution to journalArticle

2000

Near-field spectroscopy of selectively oxidized vertical cavity surface emitting lasers

Kim, J., Boyd, J. T., Jackson, H. E. & Choquette, K. D., Jan 31 2000, In : Applied Physics Letters. 76, 5, p. 526-528 3 p.

Research output: Contribution to journalArticle

1989

Torsional oscillator for internal friction data at 100 kHz

Cahill, D. G. & Van Cleve, J. E., Dec 1 1989, In : Review of Scientific Instruments. 60, 8, p. 2706-2710 5 p.

Research output: Contribution to journalArticle

2007

The quantum Hall effect in graphene from a lattice perspective

Bernevig, B. A., Hughes, T. L. & Zhang, S. C., Jul 1 2007, In : Solid State Communications. 143, 1-2, p. 20-26 7 p.

Research output: Contribution to journalArticle

2017

Dielectric Sphere Clusters as a Model to Understand Infrared Spectroscopic Imaging Data Recorded from Complex Samples

Rasskazov, I. L., Spegazzini, N., Carney, P. S. & Bhargava, R., Oct 17 2017, In : Analytical chemistry. 89, 20, p. 10813-10818 6 p.

Research output: Contribution to journalArticle

2003

Nonlinear dynamics of a system of coupled oscillators with essential stiffness nonlinearities

Vakakis, A. F. & Rand, R. H., Jan 1 2003, p. 1209-1220. 12 p.

Research output: Contribution to conferencePaper

1993

An optimization scheme for molecular dynamics simulations of radiation effects

Zhu, H. & Averback, R. S., Nov 1993, In : Nuclear Inst. and Methods in Physics Research, B. 83, 3, p. 334-338 5 p.

Research output: Contribution to journalArticle

2000

Oxide-defined GaAs vertical-cavity surface-emitting lasers on Si substrates

Xiong, Y., Zhou, Y., Zhu, Z. H., Lo, Y. H., Ji, C., Bashar, S. A., Allerman, A. A., Hargett, T., Sieg, R. & Choquette, K. D., Feb 1 2000, In : IEEE Photonics Technology Letters. 12, 2, p. 110-112 3 p.

Research output: Contribution to journalArticle

2018

Multi-frequency Atomic Force Microscopy based on enhanced internal resonance of an inner-paddled cantilever

Potekin, R., Dharmasena, S., Keum, H., Jiang, X., Lee, J., Kim, S., Bergman, L., Vakakis, A. F. & Cho, H., Apr 15 2018, In : Sensors and Actuators, A: Physical. 273, p. 206-220 15 p.

Research output: Contribution to journalArticle

2014

Controlling quantum dot energies using submonolayer bandstructure engineering

Yu, L., Law, S., Jung, D., Lee, M. L. & Wasserman, D. M., Jan 1 2014.

Research output: Contribution to conferencePaper

1986

A Contribution to the Analysis and Compensation of the Geometric Error of a Machining Center

Ferreira, P. M., Liu, C. R. & Merchant, E., 1986, In : CIRP Annals - Manufacturing Technology. 35, 1, p. 259-262 4 p.

Research output: Contribution to journalArticle

1996

Selective oxidation of buried AlGaAs versus AlAs layers

Choquette, K. D., Geib, K. M., Chui, H. C., Hammons, B. E., Hou, H. Q., Drummond, T. J. & Hull, R., Sep 2 1996, In : Applied Physics Letters. 69, 10, p. 1385-1387 3 p.

Research output: Contribution to journalArticle

1985

AIFIX: AN EXPERT SYSTEM APPROACH TO FIXTURE DESIGN.

Ferreira, P. M., Kochar, B., Liu, C. R. & Chandru, V., Dec 1 1985, p. 73-82. 10 p.

Research output: Contribution to conferencePaper

2007

An innovative simulation approach for water mediated attraction based on grid computing

Yun, Z., Keasler, S. J., Xie, M., Lei, Z., Chen, B. & Allen, G., Dec 1 2007, Proceedings - 2nd International Multi-Symposiums on Computer and Computational Sciences, IMSCCS'07. p. 204-211 8 p. 4392603. (Proceedings - 2nd International Multi-Symposiums on Computer and Computational Sciences, IMSCCS'07).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2006

Seamless integration of generic bulk operations in grid applications

Hirmer, S., Kaiser, H., Merzky, A., Hutanu, A. & Allen, G., Jan 1 2006, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4277 LNCS - I, p. 52-54 3 p.

Research output: Contribution to journalConference article

2008

Towards an integrated GIS-based coastal forecast workflow

Allen, G. D., Bogden, P., Creager, G., Dekate, C., Jesch, C., Kaiser, H., McLaren, J., Perrie, W., Stone, G. W. & Zhang, X., Sep 25 2008, In : Concurrency Computation Practice and Experience. 20, 14, p. 1637-1651 15 p.

Research output: Contribution to journalArticle

2006

From proposal to production: Lessons learned developing the computational chemistry Grid cyberinfrastructure

Dooley, R., Milfeld, K., Guiang, C., Pamidighantam, S. & Allen, G., Jun 1 2006, In : Journal of Grid Computing. 4, 2, p. 195-208 14 p.

Research output: Contribution to journalArticle

2007

Beyond queues: Using grid computing for simulation studies

Li, X., Lei, Z., El-Khamra, Y., Huang, D., White, C. D., Allen, G. & Smith, J. R., Dec 1 2007, Society of Petroleum Engineers - Digital Energy Conference and Exhibition 2007 - Bytes and Barrels: An Energy Renaissance. p. 161-173 13 p. (Society of Petroleum Engineers - Digital Energy Conference and Exhibition 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2004

E-Mail Reference as Substitute for Library Receptionist

Braxton, S. M. & Brunsdale, M., Jun 30 2004, In : Reference Librarian. 41, 85, p. 19-31

Research output: Contribution to journalArticle

2009

Semantic enabled metadata management in PetaShare

Wang, X., Huang, D., Akturk, I., Balman, M., Allen, G. & Kosar, T., Jan 1 2009, In : International Journal of Grid and Utility Computing. 1, 4, p. 275-286 12 p.

Research output: Contribution to journalArticle

2007

Building a dynamic data driven application system for hurricane forecasting

Allen, G., Dec 24 2007, Computational Science - ICCS 2007 - 7th International Conference, Proceedings, Part I. p. 1034-1041 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4487 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1999

Cactus computational toolkit and using distributed computing to collide neutron stars

Allen, G., Goodale, T., Masso, J. & Seidel, E., Dec 1 1999, In : IEEE International Symposium on High Performance Distributed Computing, Proceedings. p. 57-61 5 p.

Research output: Contribution to journalConference article

2000

Gravitational collapse of gravitational waves in 3D numerical relativity

Alcubierre, M., Allen, G., Brügmann, B., Lanfermann, G., Seidel, E., Suen, W. M. & Tobias, M., Jan 1 2000, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 61, 4

Research output: Contribution to journalArticle

2012

The Einstein Toolkit: A community computational infrastructure for relativistic astrophysics

Löffler, F., Faber, J., Bentivegna, E., Bode, T., Diener, P., Haas, R., Hinder, I., Mundim, B. C., Ott, C. D., Schnetter, E., Allen, G., Campanelli, M. & Laguna, P., Jun 7 2012, In : Classical and Quantum Gravity. 29, 11, 115001.

Research output: Contribution to journalArticle