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• Article

  A comprehensive approach to the evaluation of college teaching

  Johnson, T. D. & Ryan, K. E., Sep 2000, In: New Directions for Teaching and Learning. 2000, 83, p. 109-123 15 p.

  Research output: Contribution to journal › Article › peer-review

  • evaluation
  • Teaching

• A comprehensive approach to zinc-finger recombinase customization enables genomic targeting in human cells

  Gaj, T., Mercer, A. C., Sirk, S. J., Smith, H. L. & Barbas, C. F., Apr 2013, In: Nucleic acids research. 41, 6, p. 3937-3946 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Recombinases
  • Zinc Fingers
  • Catalytic Domain
  • Gin recombinase
  • beta-Fructofuranosidase

• A comprehensive biophysical description of pairwise epistasis throughout an entire protein domain

  Olson, C. A., Wu, N. C. & Sun, R., 2014, In: Current Biology. 24, 22, p. 2643-2651 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • epistasis
  • protein domains
  • Protein Domains
  • mutation
  • Mutation

• A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

  Huntley, S., Baggott, D. M., Hamilton, A. T., Tran-Gyamfi, M., Yang, S., Kim, J., Gordon, L., Branscomb, E. & Stubbs, L., May 2006, In: Genome Research. 16, 5, p. 669-677 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Catalogs
  • Zinc Fingers
  • History
  • Genes
  • human ZNF350 protein

• A comprehensive description of sitting time in Brazilian adults: a population-based study

  Sebastião, E., Andrade, F. C. D., Papini, C. B., Nakamura, P. M., Kokubun, E. & Gobbi, S., Dec 2020, In: Journal of Public Health (Germany). 28, 6, p. 647-655 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Sitting Position
  • Population
  • Sedentary Behavior
  • Social Class
  • Brazil

• A comprehensive evaluation of precipitation simulations over China based on CMIP5 multimodel ensemble projections

  Chen, L. & Frauenfeld, O. W., May 27 2014, In: Journal of Geophysical Research. 119, 10, p. 5767-5786 20 p.

  Research output: Contribution to journal › Article › peer-review

  • CMIP
  • China
  • projection
  • evaluation
  • simulation

• A comprehensive functional map of the hepatitis C virus genome provides a resource for probing viral proteins

  Remenyi, R., Qi, H., Su, S. Y., Chen, Z., Wu, N. C., Arumugaswami, V., Truong, S., Chu, V., Stokelman, T., Lo, H. H., Anders Olson, C., Wu, T. T., Chen, S. H., Lin, C. Y. & Sun, R., Sep 30 2014, In: mBio. 5, 5, e01469-14.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Viral Proteins
  • Hepacivirus
  • Genome
  • Research Personnel
  • Viruses

• A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data

  Dinh, H. V., Suthers, P. F., Chan, S. H. J., Shen, Y., Xiao, T., Deewan, A., Jagtap, S. S., Zhao, H., Rao, C. V., Rabinowitz, J. D. & Maranas, C. D., Dec 2019, In: Metabolic Engineering Communications. 9, e00101.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Genomics
  • Genes
  • Yeasts
  • Basidiomycota
  • Genome

• A comprehensive genomic history of extinct and living elephants

  Palkopoulou, E., Lipson, M., Mallick, S., Nielsen, S., Rohland, N., Baleka, S., Karpinski, E., Ivancevic, A. M., To, T. H., Daniel Kortschak, R., Raison, J. M., Qu, Z., Chin, T. J., Alt, K. W., Claesson, S., Dalén, L., MacPhee, R. D. E., Meller, H., Roca, A. L., Ryder, O. A. & 17 others, Heiman, D., Young, S., Breen, M., Williams, C., Aken, B. L., Ruffier, M., Karlsson, E., Johnson, J., Palma, F. D., Alfoldi, J., Adelson, D. L., Mailund, T., Munch, K., Lindblad-Toh, K., Hofreiter, M., Poinar, H. & Reich, D., 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 11, p. E2566-E2574

  Research output: Contribution to journal › Article › peer-review

  • Elephants
  • Mammoths
  • Forests
  • Grassland
  • Mastodons

• A comprehensive modeling framework to evaluate soil erosion by water and tillage

  Lee, S., Chu, M. L., Guzman, J. A. & Botero-Acosta, A., Feb 1 2021, In: Journal of Environmental Management. 279, 111631.

  Research output: Contribution to journal › Article › peer-review

  • tillage
  • Watersheds
  • Sediments
  • Erosion
  • soil erosion

• A Comprehensive Model of Electric-Field-Enhanced Jumping-Droplet Condensation on Superhydrophobic Surfaces

  Birbarah, P., Li, Z., Pauls, A. & Miljkovic, N., Jul 21 2015, In: Langmuir. 31, 28, p. 7885-7896 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Condensation
  • Electric fields
  • condensation
  • electric fields
  • heat transfer

• A comprehensive numerical simulation of Io's sublimation-driven atmosphere

  Walker, A. C., Gratiy, S. L., Goldstein, D. B., Moore, C. H., Varghese, P. L., Trafton, L. M., Levin, D. A. & Stewart, B., May 2010, In: Icarus. 207, 1, p. 409-432 24 p.

  Research output: Contribution to journal › Article › peer-review

  • frost
  • Io
  • sublimation
  • atmospheres
  • simulation

• A comprehensive phylogeny of the bumble bees (Bombus)

  Cameron, S. A., Hines, H. M. & Williams, P. H., May 2007, In: Biological Journal of the Linnean Society. 91, 1, p. 161-188 28 p.

  Research output: Contribution to journal › Article › peer-review

  • Bombus
  • phylogeny
  • interspecific variation
  • intraspecific variation
  • Bayesian analysis

• A comprehensive protocol for manual segmentation of the medial temporal lobe structures

  Moore, M., Hu, Y., Woo, S., O'Hearn, D., Iordan, A. D., Dolcos, S. & Dolcos, F., Jul 2 2014, In: Journal of Visualized Experiments. 89, e50991.

  Research output: Contribution to journal › Article › peer-review

  • Temporal Lobe
  • Brain
  • Magnetic Resonance Imaging
  • Magnetic resonance imaging
  • Amygdala

• A comprehensive study for the plasmonic thin-film solar cell with periodic structure

  Sha, W. E. I., Choy, W. C. H. & Chew, W. C., Mar 15 2010, In: Optics Express. 18, 6, p. 5993-6007 15 p.

  Research output: Contribution to journal › Article › peer-review

  • solar cells
  • thin films
  • metal strips
  • surface plasmon resonance
  • amorphous silicon

• A comprehensive study on the production of autoclaved aerated concrete: Effects of silica-lime-cement composition and autoclaving conditions

  Chen, Y-L., Chang, J-E., Lai, Y-C. & Chou, M-I. M., Oct 30 2017, In: Construction and Building Materials. 153, p. 622-629 8 p.

  Research output: Contribution to journal › Article › peer-review

  • lime
  • Silicon Dioxide
  • Lime
  • Silica
  • Compressive strength

• A Comprehensive Survey of Graph Embedding: Problems, Techniques, and Applications

  Cai, H., Zheng, V. W. & Chang, K. C. C., Sep 1 2018, In: IEEE Transactions on Knowledge and Data Engineering. 30, 9, p. 1616-1637 22 p., 8294302.

  Research output: Contribution to journal › Article › peer-review

  • Taxonomies
  • Costs

• A comprehensive survey of Rhinonyssid mites (Mesostigmata: Rhinonyssidae) in Northwest Russia: New mite-host associations and prevalence data

  De Rojas, M., Doña, J. & Dimov, I., 2020, In: Biodiversity Data Journal. 8, p. e49535 e49535.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Rhinonyssidae
  • Mesostigmata
  • Russia
  • mites
  • birds

• A comprehensive view of a strongly lensed planck-associated submillimeter galaxy

  Fu, H., Jullo, E., Cooray, A., Bussmann, R. S., Ivison, R. J., Pérez-Fournon, I., Djorgovski, S. G., Scoville, N., Yan, L., Riechers, D. A., Aguirre, J., Auld, R., Baes, M., Baker, A. J., Bradford, M., Cava, A., Clements, D. L., Dannerbauer, H., Dariush, A., De Zotti, G. & 31 others, Dole, H., Dunne, L., Dye, S., Eales, S., Frayer, D., Gavazzi, R., Gurwell, M., Harris, A. I., Herranz, D., Hopwood, R., Hoyos, C., Ibar, E., Jarvis, M. J., Kim, S., Leeuw, L., Lupu, R., Maddox, S., Martínez-Navajas, P., Michałowski, M. J., Negrello, M., Omont, A., Rosenman, M., Scott, D., Serjeant, S., Smail, I., Swinbank, A. M., Valiante, E., Verma, A., Vieira, J., Wardlow, J. L. & Van Der Werf, P., Jul 10 2012, In: Astrophysical Journal. 753, 2, 134.

  Research output: Contribution to journal › Article › peer-review

  • galaxies
  • stars
  • dust
  • star formation rate
  • gas

• A computable fourier condition generating alias-free sampling lattices

  Lu, Y. M., Do, M. N. & Laugesen, R. S., 2009, In: IEEE Transactions on Signal Processing. 57, 5, p. 1768-1782 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Sampling
  • Fourier transforms
  • Filter banks
  • Chemical analysis
  • Testing

• A computational account of the development of the generalization of shape information

  Doumas, L. A. A. & Hummel, J. E., May 2010, In: Cognitive Science. 34, 4, p. 698-712 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Generalization (Psychology)
  • Trajectories
  • Child
  • Polyvinyl Chloride
  • Recognition (Psychology)

• A computational and cellular solids approach to the stiffness-based design of bone scaffolds

  Norato, J. A. & Wagoner Johnson, A. J., Oct 18 2011, In: Journal of Biomechanical Engineering. 133, 9, 091003.

  Research output: Contribution to journal › Article › peer-review

  • Scaffolds
  • Elastic Modulus
  • Robotics
  • Bone
  • Pore size

• A computational approach to flame hole dynamics using an embedded manifold approach

  Knaus, R. & Pantano, C., Sep 1 2015, In: Journal of Computational Physics. 296, p. 209-240 32 p.

  Research output: Contribution to journal › Article › peer-review

  • Flame
  • flames
  • Diffusion Flame
  • diffusion flames
  • Evolution Equation

• A computational auditory scene analysis system for speech segregation and robust speech recognition

  Shao, Y., Srinivasan, S., Jin, Z. & Wang, D. L., Jan 2010, In: Computer Speech and Language. 24, 1, p. 77-93 17 p.

  Research output: Contribution to journal › Article › peer-review

  • Scene Analysis
  • Computational Analysis
  • Speech
  • Segregation
  • Speech recognition

• A computational cognitive modeling approach to understand and design mobile crowdsourcing for campus safety reporting

  Huang, Y., White, C., Xia, H. & Wang, Y., Jun 1 2017, In: International Journal of Human Computer Studies. 102, p. 27-40 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Crowdsourcing
  • Human computer interaction
  • experiment
  • Experiments
  • incident

• A computational fluid dynamics and chemistry model for jet fuel thermal stability

  Krazinski, J. L., Vanka, S. P., Pearce, J. A. & Roquemore, W. M., Jan 1992, In: Journal of Engineering for Gas Turbines and Power. 114, 1, p. 104-110 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Jet fuel
  • Thermodynamic stability
  • Computational fluid dynamics
  • Activation energy
  • Dissolved oxygen

• A computational framework for boosting confidence in high-throughput protein-protein interaction datasets

  Hosur, R., Peng, J., Vinayagam, A., Stelzl, U., Xu, J., Perrimon, N., Bienkowska, J. & Berger, B., 2012, In: Genome biology. 13, 8, p. R76

  Research output: Contribution to journal › Article › peer-review

  • protein-protein interactions
  • Datasets
  • protein
  • biomedical research
  • Biomedical Research

• A computational framework for constructing interactive feedback for assisting motor learning.

  Sundaram, H., Chen, Y. & Rikakis, T., Dec 1 2011, In: Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference. 2011, p. 1399-1402 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Biomechanical Phenomena
  • Kinematics
  • Learning
  • Feedback
  • Stroke

• A computational framework to explore large-scale biosynthetic diversity

  Navarro-Muñoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez-Guerra, A., Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 1 2020, In: Nature chemical biology. 16, 1, p. 60-68 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Multigene Family
  • Biological Products
  • Cluster Analysis
  • Genome
  • Metabolomics

• A computational investigation of the phase behavior and capillary sublimation of water confined between nanoscale hydrophobic plates

  Ferguson, A. L., Giovambattista, N., Rossky, P. J., Panagiotopoulos, A. Z. & Debenedetti, P. G., Oct 14 2012, In: Journal of Chemical Physics. 137, 14, 144501.

  Research output: Contribution to journal › Article › peer-review

  • Sublimation
  • Phase behavior
  • sublimation
  • Water
  • Ice

• A computational kinetic model of diffusion for molecular systems

  Teo, I. & Schulten, K., Sep 28 2013, In: Journal of Chemical Physics. 139, 12, 121929.

  Research output: Contribution to journal › Article › peer-review

  • proteins
  • kinetics
  • solutes
  • grids
  • diffusion coefficient

• A computationally convenient diversity measure: Theory and application

  Önal, H., Jan 1 1997, In: Environmental and Resource Economics. 9, 4, p. 409-427 19 p.

  Research output: Contribution to journal › Article › peer-review

  • Diversity Measures
  • mixed forest
  • conceptual framework
  • trade-off
  • Conceptual Framework

• A computationally designed inhibitor of an Epstein-Barr viral Bcl-2 protein induces apoptosis in infected cells

  Procko, E., Berguig, G. Y., Shen, B. W., Song, Y., Frayo, S., Convertine, A. J., Margineantu, D., Booth, G., Correia, B. E., Cheng, Y., Schief, W. R., Hockenbery, D. M., Press, O. W., Stoddard, B. L., Stayton, P. S. & Baker, D., Jun 19 2014, In: Cell. 157, 7, p. 1644-1656 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Viruses
  • Human Herpesvirus 4
  • BINDI protein
  • Apoptosis
  • Immunoconjugates

• A computationally efficient norm optimal iterative learning control approach for LTV systems

  Sun, H. & Alleyne, A. G., Jan 1 2014, In: Automatica. 50, 1, p. 141-148 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Computational complexity
  • Cost functions
  • Sampling

• A Computational Model for Kinetic Studies of Cadherin Binding and Clustering

  Chen, J., Newhall, J., Xie, Z. R., Leckband, D. & Wu, Y., Oct 4 2016, In: Biophysical journal. 111, 7, p. 1507-1518 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Cadherins
  • Cluster Analysis
  • Kinetics
  • Glycosylation
  • Adhesives

• A computational model for nanosecond pulse laser-plasma interactions

  Munafò, A., Alberti, A., Pantano, C., Freund, J. B. & Panesi, M., Apr 1 2020, In: Journal of Computational Physics. 406, 109190.

  Research output: Contribution to journal › Article › peer-review

  • Laser-plasma Interaction
  • Plasma interactions
  • laser plasma interactions
  • Laser pulses
  • Laser

• A computational model of feedback-mediated hematopoietic stem cell differentiation in vitro

  Mahadik, B., Hannon, B. & Harley, B. A. C., Mar 2019, In: PloS one. 14, 3, e0212502.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Stem cells
  • hematopoietic stem cells
  • cell differentiation
  • Hematopoietic Stem Cells
  • Cell Differentiation

• A computational model to study film formation and debris flushing phenomena in spray-electric discharge machining

  Pattabhiraman, A., Marla, D. & Kapoor, S. G., Sep 1 2016, In: Journal of Micro and Nano-Manufacturing. 4, 3, 031002.

  Research output: Contribution to journal › Article › peer-review

  • Electric discharge machining
  • Debris
  • Dielectric films
  • Film thickness
  • Thin films

• A computational model to study film formation and debris flushing phenomena in spray- electric discharge machining

  Pattabhiraman, A., Marla, D. & Kapoor, S. G., Sep 2016, In: Journal of Micro and Nano-Manufacturing. 4, 3, 031002.

  Research output: Contribution to journal › Article › peer-review

  • Electric discharge machining
  • Debris
  • Dielectric films
  • Film thickness
  • Thin films

• A computational paradigm for multiresolution topology optimization (MTOP)

  Nguyen, T. H., Paulino, G. H., Song, J. & Le, C. H., Apr 1 2010, In: Structural and Multidisciplinary Optimization. 41, 4, p. 525-539 15 p.

  Research output: Contribution to journal › Article › peer-review

  • Topology Optimization
  • Multiresolution
  • Shape optimization
  • Paradigm
  • Mesh

• A computational reaction-diffusion model for the analysis of transport- limited kinetics

  Vijayendran, R. A., Ligler, F. S. & Leckband, D. E., Dec 1 1999, In: Analytical chemistry. 71, 23, p. 5405-5412 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Biosensors
  • Trinitrotoluene
  • Trinitrobenzenes
  • Rate constants
  • Fluorescence

• A Computational Statistics Approach to Evaluate Blood Biomarkers for Breast Cancer Risk Stratification

  Oktay, K., Santaliz-Casiano, A., Patel, M., Marino, N., Storniolo, A. M. V., Torun, H., Acar, B. & Madak Erdogan, Z., Feb 1 2020, In: Hormones and Cancer. 11, 1, p. 17-33 17 p.

  Research output: Contribution to journal › Article › peer-review

  • Statistics
  • Biomarkers
  • Breast Neoplasms
  • Liquid Biopsy
  • Mammography

• A Computational Study of Distributed Rule Learning

  Sikora, R. & Shaw, M. J-P., Jun 1996, In: Information Systems Research. 7, 2, p. 189-197 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Learning Systems
  • Learning systems
  • Group Problem Solving
  • learning
  • Learning Strategies

• A computational study of supersonic disk-gap-band parachutes using Large-Eddy Simulation coupled to a structural membrane

  Karagiozis, K., Kamakoti, R., Cirak, F. & Pantano, C., Feb 1 2011, In: Journal of Fluids and Structures. 27, 2, p. 175-192 18 p.

  Research output: Contribution to journal › Article › peer-review

  • Parachutes
  • Compressible flow
  • Energy gap
  • Fluid structure interaction
  • Large eddy simulation

• A computed tomography implementation of multiple-image radiography

  Brankov, J. G., Wernick, M. N., Yang, Y., Li, J., Muehleman, C., Zhong, Z. & Anastasio, M. A., Feb 2006, In: Medical Physics. 33, 2, p. 278-289 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Radiography
  • Tomography
  • X-Rays
  • Photons
  • Radiation

• A computed tomography scan and anatomical cadaveric study of the pterygopalatine ganglion for use in Gamma Knife treatment of cluster headache

  Alvernia, J. E., Spomar, D. G. & Olivero, W. C., Oct 1 2007, In: Journal of Neurosurgery. 107, 4, p. 805-808 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Parasympathetic Ganglia
  • Cluster Headache
  • Tomography
  • Cadaver
  • Head

• A Computer Activity for Building a Linear Model of Data

  Travers, K. J., Dec 1977, In: School Science and Mathematics. 77, 8, p. 653-658

  Research output: Contribution to journal › Article › peer-review

• A computer based study management system

  Anderson, T. H., Anderson, R. C., Dalgaard, B. R., Wietecha, E. J., Biddle, W. B., Paden, D. W., Smock, H. R., Alessi, S. M., Surber, J. R. & Klemt, L. L., Jan 1 1974, In: Educational Psychologist. 11, 1, p. 36-45 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Students
  • Computer Terminals
  • Libraries
  • Economics

• A computer-based violence prevention intervention for young adolescents: Pilot study

  Bosworth, K., Espelage, D. & DuBay, T., Dec 1 1998, In: Adolescence. 33, 132, p. 785-795 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Anger Management Therapy
  • Cartoons
  • Multimedia
  • cartoon
  • Violence

• A Computer Conquers Tactical Combinations

  Blair, D. J. & Burke, M. D., Jan 9 2020, In: Chem. 6, 1, p. 12-13 2 p.

  Research output: Contribution to journal › Article › peer-review

  • Organic Chemistry
  • Molecules
  • organic chemistry
  • material