Find Research Outputs

Search in all content

Filters for Research & Scholarship

Search concepts
Selected Filters

Publication Year

  • 2020
  • 2019
  • 2018
  • 2017
  • 2016
  • 2015
  • 2014
  • 2013
  • 2012
  • 2011

Author

  • Martin H W Gruebele
2012

Rapid perturbation of free-energy landscapes: From in vitro to in vivo

Gelman, H., Platkov, M. & Gruebele, M., May 21 2012, In : Chemistry - A European Journal. 18, 21, p. 6420-6427 8 p.

Research output: Contribution to journalArticle

2011

Conformational energy gaps and scaling of conformer density in chain molecules

Walters, P. L., Prigozhin, M. B., Takeshita, T. Y., Xu, L., Olivarez, F. M. & Gruebele, M., Apr 29 2011, In : Chemical Physics Letters. 507, 1-3, p. 15-18 4 p.

Research output: Contribution to journalArticle

2020

Unraveling the Fluorescence Mechanism of Carbon Dots with Sub-Single-Particle Resolution

Nguyen, H. A., Srivastava, I., Pan, D. & Gruebele, M., May 26 2020, In : ACS Nano. 14, 5, p. 6127-6137 11 p.

Research output: Contribution to journalArticle

2016

Subcellular modulation of protein VlsE stability and folding kinetics

Tai, J., Dave, K., Hahn, V., Guzman, I. & Gruebele, M., May 1 2016, In : FEBS Letters. 590, 10, p. 1409-1416 8 p.

Research output: Contribution to journalArticle

2015

Native conformational dynamics of the spliceosomal U1A protein

Guzman, I., Ghaemi, Z., Baranger, A., Luthey-Schulten, Z. & Gruebele, M., Mar 5 2015, In : Journal of Physical Chemistry B. 119, 9, p. 3651-3661 11 p.

Research output: Contribution to journalArticle

2012

Communication: An obligatory glass surface

Ashtekar, S., Nguyen, D., Zhao, K., Lyding, J., Wang, W. H. & Gruebele, M., Oct 14 2012, In : Journal of Chemical Physics. 137, 14, 141102.

Research output: Contribution to journalArticle

2013

More protected vibrational states at the dissociation limit of SCCl 2

Berrios, E., Pratt, S., Tripathi, P. & Gruebele, M., Nov 21 2013, In : Journal of Physical Chemistry A. 117, 46, p. 12082-12090 9 p.

Research output: Contribution to journalArticle

Quinary protein structure and the consequences of crowding in living cells: Leaving the test-tube behind

Wirth, A. J. & Gruebele, M., Nov 1 2013, In : BioEssays. 35, 11, p. 984-993 10 p.

Research output: Contribution to journalArticle

2012

Studying IDP stability and dynamics by fast relaxation imaging in living cells

Dhar, A., Prigozhin, M., Gelman, H. & Gruebele, M., Aug 29 2012, Intrinsically Disordered Protein Analysis: Volume 1, Methods and Experimental Tools. Uversky, V., Uversky, V. & Dunker, K. (eds.). p. 101-111 11 p. (Methods in Molecular Biology; vol. 895).

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Mapping fast protein folding with multiple-site fluorescent probes

Prigozhin, M. B., Chao, S. H., Sukenik, S., Pogorelov, T. V. & Gruebele, M., Jun 30 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 26, p. 7966-7971 6 p.

Research output: Contribution to journalArticle

2012

Improved graphene growth and fluorination on Cu with clean transfer to surfaces

Wood, J. D., Schmucker, S. W., Haasch, R. T., Doidge, G. P., Nienhaus, L., Damhorst, G. L., Lyons, A. S., Gruebele, M., Bashir, R., Pop, E. & Lyding, J. W., Nov 22 2012, 2012 12th IEEE International Conference on Nanotechnology, NANO 2012. 6322101. (Proceedings of the IEEE Conference on Nanotechnology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2020

Chaperones Hsc70 and Hsp70 Bind to the Protein PGK Differently inside Living Cells

Guin, D. & Gruebele, M., May 7 2020, In : Journal of Physical Chemistry B. 124, 18, p. 3629-3635 7 p.

Research output: Contribution to journalArticle

2016

Composition-dependent metallic glass alloys correlate atomic mobility with collective glass surface dynamics

Nguyen, D., Zhu, Z. G., Pringle, B., Lyding, J., Wang, W. H. & Gruebele, M., 2016, In : Physical Chemistry Chemical Physics. 18, 25, p. 16856-16861 6 p.

Research output: Contribution to journalArticle

2017

Direct Imaging of Protein Stability and Folding Kinetics in Hydrogels

Kisley, L., Serrano, K. A., Guin, D., Kong, X., Gruebele, M. & Leckband, D. E., Jul 5 2017, In : ACS Applied Materials and Interfaces. 9, 26, p. 21606-21617 12 p.

Research output: Contribution to journalArticle

2014

Transparent metal films for detection of single-molecule optical absorption by scanning tunneling microscopy

Nienhaus, L., Scott, G. E., Haasch, R. T., Wieghold, S., Lyding, J. W. & Gruebele, M., Jun 19 2014, In : Journal of Physical Chemistry C. 118, 24, p. 13196-13202 7 p.

Research output: Contribution to journalArticle

2011

Better biomolecule thermodynamics from kinetics

Girdhar, K., Scott, G., Chemla, Y. R. & Gruebele, M., Jul 7 2011, In : Journal of Chemical Physics. 135, 1, 015102.

Research output: Contribution to journalArticle

2017

Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape

Ghaemi, Z., Guzman, I., Gnutt, D., Luthey-Schulten, Z. & Gruebele, M., Sep 14 2017, In : Journal of Physical Chemistry B. 121, 36, p. 8437-8446 10 p.

Research output: Contribution to journalArticle

2012

Crowding effects on the small, fast-folding protein λ6-85

Denos, S., Dhar, A. & Gruebele, M., 2012, In : Faraday Discussions. 157, p. 451-462 12 p.

Research output: Contribution to journalArticle

2017

The Surface of Protein λ6-85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure

Chao, S. H., Schäfer, J. & Gruebele, M., Oct 24 2017, In : Biochemistry. 56, 42, p. 5671-5678 8 p.

Research output: Contribution to journalArticle

2018

Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking

Chen, T., Dave, K. & Gruebele, M., Apr 2018, In : FEBS Letters. 592, 8, p. 1357-1365 9 p.

Research output: Contribution to journalLetter

2014

Periodic and stochastic thermal modulation of protein folding kinetics

Platkov, M. & Gruebele, M., Jul 21 2014, In : Journal of Chemical Physics. 141, 3, 035103.

Research output: Contribution to journalArticle

The extracellular protein VlsE is destabilized inside cells

Guzman, I., Gelman, H., Tai, J. & Gruebele, M., Jan 9 2014, In : Journal of Molecular Biology. 426, 1, p. 11-20 10 p.

Research output: Contribution to journalArticle

2011

Protein native-state stabilization by placing aromatic side chains in N-glycosylated reverse turns

Culyba, E. K., Price, J. L., Hanson, S. R., Dhar, A., Wong, C. H., Gruebele, M., Powers, E. T. & Kelly, J. W., Feb 4 2011, In : Science. 331, 6017, p. 571-575 5 p.

Research output: Contribution to journalArticle

2013

Franck-condon fingerprinting of vibration-tunneling spectra

Berrios, E., Sundaradevan, P. & Gruebele, M., Aug 15 2013, In : Journal of Physical Chemistry A. 117, 32, p. 7535-7541 7 p.

Research output: Contribution to journalArticle

2019

Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression

Cai, D., Feliciano, D., Dong, P., Flores, E., Gruebele, M., Porat-Shliom, N., Sukenik, S., Liu, Z. & Lippincott-Schwartz, J., Dec 1 2019, In : Nature Cell Biology. 21, 12, p. 1578-1589 12 p.

Research output: Contribution to journalArticle

2014

Nonlinear interferometric vibrational imaging and spectroscopy

Tu, H., Jiang, Z., Chowdary, P. D., Benalcazar, W., Chaney, E. J., Marks, D. L., Gruebele, M. & Boppart, S. A., Jan 1 2014, Biomedical Photonics Handbook, Second Edition: Therapeutics and Advanced Biophotonics. CRC Press, p. 273-293 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Critical Phenomena in the Temperature-Pressure-Crowding Phase Diagram of a Protein

Gasic, A. G., Boob, M. M., Prigozhin, M. B., Homouz, D., Daugherty, C. M., Gruebele, M. & Cheung, M. S., Nov 18 2019, In : Physical Review X. 9, 4, 041035.

Research output: Contribution to journalArticle

Open Access
2016

High-resolution mapping of the folding transition state of a WW domain

Dave, K., Jäger, M., Nguyen, H., Kelly, J. W. & Gruebele, M., Apr 24 2016, In : Journal of Molecular Biology. 428, 8, p. 1617-1636 20 p.

Research output: Contribution to journalArticle

2011

Two-and higher point correlation functions in proteins

Gruebele, M., Feb 2011, In : Journal of Biomolecular Structure and Dynamics. 28, 4, p. 615-616 2 p.

Research output: Contribution to journalArticle

2013

Tribute to Peter G. Wolynes.

Eaton, W. A., Gruebele, M., Lubchenko, V. & Onuchic, J. N., Oct 24 2013, In : The journal of physical chemistry. B. 117, 42, p. 12669-12671 3 p.

Research output: Contribution to journalArticle

2020

Cytoskeletal Drugs Modulate Off-Target Protein Folding Landscapes Inside Cells

Davis, C. M. & Gruebele, M., Jul 21 2020, In : Biochemistry. 59, 28, p. 2650-2659 10 p.

Research output: Contribution to journalArticle

2013

A thermodynamic derivation of the reciprocal relations

Kocherginsky, N. & Gruebele, M., Mar 28 2013, In : Journal of Chemical Physics. 138, 12, 124502.

Research output: Contribution to journalArticle

2014

Protein dynamics in simulation and experiment

Gruebele, M. H. W., Dec 3 2014, In : Journal of the American Chemical Society. 136, 48, p. 16695-16697 3 p.

Research output: Contribution to journalEditorial

2012

THz Technology and THz Spectroscopy: Modeling and Experiments to Study Solvation Dynamics of Biomolecules

Leitner, D. M., Gruebele, M. & Havenith-Newen, M., Apr 25 2012, Methods in Physical Chemistry. Wiley-VCH, Vol. 1. p. 687-710 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Transient conformational fluctuation of TePixD during a reaction

Kuroi, K., Okajima, K., Ikeuchi, M., Tokutomi, S., Terazima, M. & Gruebele, M., Oct 14 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 41, p. 14764-14769 6 p.

Research output: Contribution to journalArticle

2017

Parallel folding pathways of Fip35 WW domain explained by infrared spectra and their computer simulation

Zanetti-Polzi, L., Davis, C. M., Gruebele, M., Dyer, R. B., Amadei, A. & Daidone, I., Oct 2017, In : FEBS Letters. 591, 20, p. 3265-3275 11 p.

Research output: Contribution to journalLetter

2011

Reducing lambda repressor to the core

Prigozhin, M. B., Sarkar, K., Law, D., Swope, W. C., Gruebele, M. & Pitera, J., Mar 10 2011, In : Journal of Physical Chemistry B. 115, 9, p. 2090-2096 7 p.

Research output: Contribution to journalArticle

2015

Imaging Excited Orbitals of Quantum Dots: Experiment and Electronic Structure Theory

Nienhaus, L., Goings, J. J., Nguyen, D., Wieghold, S., Lyding, J. W., Li, X. & Gruebele, M., Nov 25 2015, In : Journal of the American Chemical Society. 137, 46, p. 14743-14750 8 p.

Research output: Contribution to journalArticle

2013

Misplaced helix slows down ultrafast pressure-jump protein folding

Prigozhin, M. B., Liu, Y., Wirth, A. J., Kapoor, S., Winter, R., Schulten, K. & Gruebele, M., May 14 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 20, p. 8087-8092 6 p.

Research output: Contribution to journalArticle

Transient helical structure during PI3K and Fyn SH3 domain folding

Matsumura, Y., Shinjo, M., Kim, S. J., Okishio, N., Gruebele, M. & Kihara, H., May 2 2013, In : Journal of Physical Chemistry B. 117, 17, p. 4836-4843 8 p.

Research output: Contribution to journalArticle

2011

Direct imaging of two-state dynamics on the amorphous silicon surface

Ashtekar, S., Scott, G., Lyding, J. & Gruebele, M., Jun 10 2011, In : Physical review letters. 106, 23, 235501.

Research output: Contribution to journalArticle

2018

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

Davis, C. M. & Gruebele, M., Apr 3 2018, In : Biochemistry. 57, 13, p. 1929-1938 10 p.

Research output: Contribution to journalReview article

2014

Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment

Liu, Y., Prigozhin, M. B., Schulten, K. & Gruebele, M., Mar 19 2014, In : Journal of the American Chemical Society. 136, 11, p. 4265-4272 8 p.

Research output: Contribution to journalArticle

2020

Crowding, Sticking, and Partial Folding of GTT WW Domain in a Small Cytoplasm Model

Rickard, M. M., Zhang, Y., Pogorelov, T. V., Pogorelov, T. V., Pogorelov, T. V., Pogorelov, T. V., Gruebele, M., Gruebele, M., Gruebele, M. & Gruebele, M., Jun 11 2020, In : Journal of Physical Chemistry B. 124, 23, p. 4732-4740 9 p.

Research output: Contribution to journalArticle

2016

Disulfide bridges: Bringing together frustrated structure in a bioactive peptide

Zhang, Y., Schulten, K., Gruebele, M., Bansal, P. S., Wilson, D. & Daly, N. L., Apr 26 2016, In : Biophysical journal. 110, 8, p. 1744-1752 9 p.

Research output: Contribution to journalArticle

2015

Sub-nanometer glass surface dynamics induced by illumination

Nguyen, D., Nienhaus, L., Haasch, R. T., Lyding, J. & Gruebele, M., Jun 21 2015, In : Journal of Chemical Physics. 142, 23, 234505.

Research output: Contribution to journalArticle

2017

Weak protein-protein interactions in live cells are quantified by cell-volume modulation

Sukenik, S., Ren, P. & Gruebele, M., Jun 27 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 26, p. 6776-6781 6 p.

Research output: Contribution to journalArticle

2019

Competition of individual domain folding with inter-domain interaction in WW domain engineered repeat proteins

Dave, K., Gasic, A. G., Cheung, M. S. & Gruebele, M., Jan 1 2019, In : Physical Chemistry Chemical Physics. 21, 44, p. 24393-24405 13 p.

Research output: Contribution to journalArticle

2015

The behavioral space of zebrafish locomotion and its neural network analog

Girdhar, K., Gruebele, M. & Chemla, Y. R., Jul 1 2015, In : PloS one. 10, 7, e0128668.

Research output: Contribution to journalArticle

2014

Filling up the heme pocket stabilizes apomyoglobin and speeds up its folding

Goodman, J. S., Chao, S. H., Pogorelov, T. V. & Gruebele, M., Jun 19 2014, In : Journal of Physical Chemistry B. 118, 24, p. 6511-6518 8 p.

Research output: Contribution to journalArticle