Find Research outputs

Search results

• Article

  Transcriptional profiling of estrogen-regulated gene expression via estrogen receptor (ER) α or ERβ in human osteosarcoma cells: Distinct and common target genes for these receptors

  Stossi, F., Barnett, D. H., Frasor, J., Komm, B., Lyttle, C. R. & Katzenellenbogen, B. S., Jul 2004, In: Endocrinology. 145, 7, p. 3473-3486 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional Profiling of Porcine HCC Xenografts Provides Insights Into Tumor Cell Microenvironment Signaling

  Patel, S. S., Sandur, A., El-Kebir, M., Gaba, R. C., Schook, L. B. & Schachtschneider, K. M., Apr 29 2021, In: Frontiers in Genetics. 12, 657330.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional profiling of swine mammary gland during the transition from colostrogenesis to lactogenesis using RNA sequencing

  Palombo, V., Loor, J. J., D'Andrea, M., Vailati-Riboni, M., Shahzad, K., Krogh, U. & Theil, P. K., May 3 2018, In: BMC genomics. 19, 1, 322.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional profiling of the spleen in progressive visceral leishmaniasis reveals mixed expression of type 1 and type 2 cytokine-responsive genes

  Espitia, C. M., Saldarriaga, O. A., Travi, B. L., Osorio, E. Y., Hernandez, A., Band, M., Patel, M. J., Medina, A. A., Cappello, M., Pekosz, A. & Melby, P. C., Nov 26 2014, In: BMC Immunology. 15, 1, 38.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional profiling reveals elevated CO₂ and elevated O₃ alter resistance of soybean (Glycine max) to Japanese beetles (Popillia japonica)

  Casteel, C. L., O'Neill, B. F., Zavala, J. A., Bilgin, D. D., Berenbaum, M. R. & DeLucia, E. H., Apr 2008, In: Plant, Cell and Environment. 31, 4, p. 419-434 16 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional profiling reveals molecular basis and novel genetic targets for improved resistance to multiple fermentation inhibitors in Saccharomyces cerevisiae

  Chen, Y., Sheng, J., Jiang, T., Stevens, J., Feng, X. & Wei, N., Jan 13 2016, In: Biotechnology for Biofuels. 9, 1, 418.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution

  Cheng, J. B., Sedgewick, A. J., Finnegan, A. I., Harirchian, P., Lee, J., Kwon, S., Fassett, M. S., Golovato, J., Gray, M., Ghadially, R., Liao, W., Perez White, B. E., Mauro, T. M., Mully, T., Kim, E. A., Sbitany, H., Neuhaus, I. M., Grekin, R. C., Yu, S. S., Gray, J. W., & 6 othersPurdom, E., Paus, R., Vaske, C. J., Benz, S. C., Song, J. S. & Cho, R. J., Oct 23 2018, In: Cell Reports. 25, 4, p. 871-883 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulation of alcohol induced liver fibrosis in a translational porcine hepatocellular carcinoma model

  Yasmin, A., Regan, D. P., Schook, L. B., Gaba, R. C. & Schachtschneider, K. M., Mar 2021, In: Biochimie. 182, p. 73-84 12 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of Arabidopsis thaliana phytochelatin synthase (AtPCS1) by cadmium during early stages of plant development

  Lee, S. & Korban, S. S., 2002, In: Planta. 215, 4, p. 689-693 5 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of autophagy by an FXR-CREB axis

  Seok, S., Fu, T., Choi, S. E., Li, Y., Zhu, R., Kumar, S., Sun, X., Yoon, G., Kang, Y., Zhong, W., Ma, J., Kemper, B. & Kemper, J. K., Dec 4 2014, In: Nature. 516, 729, p. 108-111 4 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of brain gene expression in response to a territorial intrusion

  Sanogo, Y. O., Band, M., Blatti, C., Sinha, S. & Bell, A. M., 2012, In: Proceedings of the Royal Society B: Biological Sciences. 279, 1749, p. 4929-4938 10 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of dosage compensation in Carica papaya

  Liu, J., Han, J., Sharma, A., Wai, C. M., Ming, R. & Yu, Q., Dec 2021, In: Scientific reports. 11, 1, 5854.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulation of fatty acid cis–trans isomerization in the solvent-tolerant soil bacterium, Pseudomonas putida F1

  Kondakova, T. & Cronan, J. E., May 2019, In: Environmental Microbiology. 21, 5, p. 1659-1676 18 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of puc operon expression in Rhodobacter sphaeroides. Involvement of an integration host factor-binding sequence

  Lee, J. K., Wang, S., Eraso, J. M., Gardner, J. & Kaplan, S., 1993, In: Journal of Biological Chemistry. 268, 32, p. 24491-24497 7 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR and Fur

  Ikeda, J. S., Janakiraman, A., Kehres, D. G., Maguire, M. E. & Slauch, J. M., Feb 2005, In: Journal of bacteriology. 187, 3, p. 912-922 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of spermiogenesis: Insights from the study of the gene encoding the acrosomal protein SP-10

  Reddi, P. P., Shore, A. N., Acharya, K. K. & Herr, J. C., 2002, In: Journal of Reproductive Immunology. 53, 1-2, p. 25-36 12 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of the human quinone reductase gene by antiestrogen-liganded estrogen receptor-α and estrogen receptor-β

  Montano, M. M., Jaiswal, A. K. & Katzenellenbogen, B. S., Sep 25 1998, In: Journal of Biological Chemistry. 273, 39, p. 25443-25449 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional regulation of the novel toll-like receptor Tlr13

  Shi, Z., Cai, Z., Wen, S., Chen, C., Gendron, C., Sanchez, A., Patterson, K., Fu, S., Yang, J., Wildman, D., Finnell, R. H. & Zhang, D., Jul 31 2009, In: Journal of Biological Chemistry. 284, 31, p. 20540-20547 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulation of the Papilio polyxenes CYP6B1 gene

  Prapaipong, H., Berenbaum, M. R. & Schuler, M. A., Aug 11 1994, In: Nucleic acids research. 22, 15, p. 3210-3217 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional Regulation of the Tumor Necrosis Factor α Gene

  Jongeneel, C. V., 1995, In: Immunobiology. 193, 2-4, p. 210-216 7 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulator Id2 is required for the CD4 T cell immune response in the development of experimental autoimmune encephalomyelitis

  Lin, Y. Y., Jones-Mason, M. E., Inoue, M., Lasorella, A., Iavarone, A., Li, Q. J., Shinohara, M. L. & Zhuang, Y., Aug 1 2012, In: Journal of Immunology. 189, 3, p. 1400-1405 6 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice

  Saul, M. C., Seward, C. H., Troy, J. M., Zhang, H., Sloofman, L. G., Lu, X., Weisner, P. A., Caetano-Anolles, D., Sun, H., Zhao, S. D., Chandrasekaran, S., Sinha, S. & Stubbs, L., Jun 2017, In: Genome Research. 27, 6, p. 959-972 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional regulatory elements for basal expression of cytochrome P450IIC genes

  Venepally, P., Chen, D. & Kemper, B., 1992, In: Journal of Biological Chemistry. 267, 24, p. 17333-17338 6 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional reprogramming and stimulation of leaf respiration by elevated CO₂ concentration is diminished, but not eliminated, under limiting nitrogen supply

  Markelz, R. J. C., Lai, L. X., Vosseler, L. N. & Leakey, A. D. B., Apr 2014, In: Plant, Cell and Environment. 37, 4, p. 886-898 13 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional response elements in the promoter of CYP6B1, an insect P450 gene regulated by plant chemicals

  Petersen, R. A., Niamsup, H., Berenbaum, M. R. & Schuler, M. A., Feb 17 2003, In: Biochimica et Biophysica Acta - General Subjects. 1619, 3, p. 269-282 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional responses indicate maintenance of photosynthetic proteins as key to the exceptional chilling tolerance of C₄ photosynthesis in Miscanthus × giganteus

  Spence, A. K., Boddu, J., Wang, D., James, B., Swaminathan, K., Moose, S. P. & Long, S. P., Jul 2014, In: Journal of experimental botany. 65, 13, p. 3737-3747 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional responses to sucrose mimic the plant-associated life style of the plant growth promoting endophyte enterobacter sp. 638

  Taghavi, S., Wu, X., Ouyang, L., Zhang, Y. B., Stadler, A., McCorkle, S., Zhu, W., Maslov, S. & Van Der Lelie, D., Jan 21 2015, In: PloS one. 10, 1, e0115455.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcriptional response to foraging experience in the honey bee mushroom bodies

  Lutz, C. C., Rodriguez-Zas, S. L., Fahrbach, S. E. & Robinson, G. E., Feb 2012, In: Developmental Neurobiology. 72, 2, p. 153-166 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional signatures in response to wheat germ agglutinin and starvation in Drosophila melanogaster larval midgut

  Li, H. M., Sun, L., Mittapalli, O., Muir, W. M., Xie, J., Wu, J., Schemerhorn, B. J., Sun, W., Pittendrigh, B. R. & Murdock, L. L., Feb 2009, In: Insect Molecular Biology. 18, 1, p. 21-31 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional silencing by unliganded thyroid hormone receptor β requires a soluble corepressor that interacts with the ligand-binding domain of the receptor

  Tong, G. X., Jeyakumar, M., Tanen, M. R. & Bagchi, M. K., May 1996, In: Molecular and cellular biology. 16, 5, p. 1909-1920 12 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional silencing of N-Myc downstream-regulated gene 1 (NDRG1) in metastatic colon cancer cell line SW620

  Li, Q. & Chen, H., Feb 2011, In: Clinical and Experimental Metastasis. 28, 2, p. 127-135 9 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptional upregulation of histone deacetylase 2 promotes Myc-induced oncogenic effects

  Marshall, G. M., Gherardi, S., Xu, N., Neiron, Z., Trahair, T., Scarlett, C. J., Chang, D. K., Liu, P. Y., Jankowski, K., Iraci, N., Haber, M., Norris, M. D., Keating, J., Sekyere, E., Jonquieres, G., Stossi, F., Katzenellenbogen, B. S., Biankin, A. V., Perini, G. & Liu, T., Nov 4 2010, In: Oncogene. 29, 44, p. 5957-5968 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription coactivator peroxisome proliferator-activated receptor-binding protein/mediator 1 deficiency abrogates acetaminophen hepatotoxicity

  Jia, Y., Guo, G. L., Surapureddi, S., Sarkar, J., Qi, C., Guo, D., Xia, J., Kashireddi, P., Yu, S., Cho, Y. W., Rao, M. S., Kemper, B., Ge, K., Gonzalez, F. J. & Reddy, J. K., Aug 30 2005, In: Proceedings of the National Academy of Sciences of the United States of America. 102, 35, p. 12531-12536 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription factor CCAAT enhancer-binding protein β (C/EBPβ) regulates the formation of a unique extracellular matrix that controls uterine stromal differentiation and embryo implantation

  Ramathal, C., Wang, W., Hunt, E., Bagchi, I. C. & Bagchi, M. K., Jun 3 2011, In: Journal of Biological Chemistry. 286, 22, p. 19860-19871 12 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription factor EB (TFEB)-mediated autophagy protects bovine mammary epithelial cells against H₂O₂-induced oxidative damage in vitro

  Sun, X., Chang, R., Tang, Y., Luo, S., Jiang, C., Jia, H., Xu, Q., Dong, Z., Liang, Y., Loor, J. J. & Xu, C., Dec 2021, In: Journal of Animal Science and Biotechnology. 12, 1, 35.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription factor IID in the Archaea: Sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes

  Marsh, T. L., Reich, C. I., Whitelock, R. B. & Olsen, G. J., May 10 1994, In: Proceedings of the National Academy of Sciences of the United States of America. 91, 10, p. 4180-4184 5 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription Factor-MicroRNA-Target Gene Networks Associated with Ovarian Cancer Survival and Recurrence

  Delfino, K. R. & Rodriguez-Zas, S. L., Mar 12 2013, In: PloS one. 8, 3, e58608.

  Research output: Contribution to journal › Article › peer-review

• Transcription Factor RFX2 Is a Key Regulator of Mouse Spermiogenesis

  Wu, Y., Hu, X., Li, Z., Wang, M., Li, S., Wang, X., Lin, X., Liao, S., Zhang, Z., Feng, X., Wang, S., Cui, X., Wang, Y., Gao, F., Hess, R. A. & Han, C., Feb 8 2016, In: Scientific reports. 6, 20435.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription factor Runx1 recruits the polyomavirus replication origin to replication factories

  Murakami, Y., Chen, L. F., Sanechika, N., Kohzaki, H. & Ito, Y., Apr 1 2007, In: Journal of Cellular Biochemistry. 100, 5, p. 1313-1323 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling

  Shamimuzzaman, M. & Vodkin, L., Nov 16 2014, In: Functional and Integrative Genomics. 14, 4, p. 683-696 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription Factor Tfe3 Directly Regulates Pgc-1alpha in Muscle

  Salma, N., Song, J. S., Arany, Z. & Fisher, D. E., Oct 1 2015, In: Journal of Cellular Physiology. 230, 10, p. 2330-2336 7 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription from the pseudorabies virus genome during latent infection

  Rock, D. L., Hagemoser, W. A., Osorio, F. A. & McAllister, H. A., Mar 1 1988, In: Archives of Virology. 98, 1-2, p. 99-106 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription-independent functions of an RNA polymerase II subunit, Rpb2, during genome rearrangement in the ciliate, Oxytricha trifallax

  Khurana, J. S., Wang, X., Chen, X., Perlman, D. H. & Landweber, L. F., Jul 2014, In: Genetics. 197, 3, p. 839-849 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription Initiation in a Single-Subunit RNA Polymerase Proceeds through DNA Scrunching and Rotation of the N-Terminal Subdomains

  Tang, G. Q., Roy, R., Ha, T. & Patel, S. S., Jun 5 2008, In: Molecular cell. 30, 5, p. 567-577 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription of a lepidopteran cytochrome P450 promoter is modulated by multiple elements in its 5′ UTR and repressed by 20-hydroxyecdysone

  Brown, R. P., Berenbaum, M. R. & Schuler, M. A., Aug 2004, In: Insect Molecular Biology. 13, 4, p. 337-347 11 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription of the human folylpoly-γ-glutamate synthetase gene

  Freemantle, S. J. & Moran, R. G., Oct 3 1997, In: Journal of Biological Chemistry. 272, 40, p. 25373-25379 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Transcription of the testis-specific mouse protamine 2 gene in a homologous in vitro transcription system

  Bunick, D., Johnson, P. A., Johnson, T. R. & Hecht, N. B., 1990, In: Proceedings of the National Academy of Sciences of the United States of America. 87, 3, p. 891-895 5 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription pattern of p53-targeted DNA repair genes in the hypoxia-tolerant subterranean mole rat Spalax

  Shams, I., Malik, A., Manov, I., Joel, A., Band, M. & Avivi, A., Apr 12 2013, In: Journal of Molecular Biology. 425, 7, p. 1111-1118 8 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription profiling of soybean nodulation by Bradyrhizobium japonicum

  Brechenmacher, L., Kim, M. Y., Benitez, M., Li, M., Joshi, T., Calla, B., Mei, P. L., Libault, M., Vodkin, L. O., Xu, D., Lee, S. H., Clough, S. J. & Stacey, G., May 2008, In: Molecular Plant-Microbe Interactions. 21, 5, p. 631-645 15 p.

  Research output: Contribution to journal › Article › peer-review

• Transcription Regulation and Genome Rewiring Governing Sensitivity and Resistance to FOXM1 Inhibition in Breast Cancer

  Ziegler, Y., Guillen, V. S., Kim, S. H., Katzenellenbogen, J. A. & Katzenellenbogen, B. S., Dec 1 2021, In: Cancers. 13, 24, 6282.

  Research output: Contribution to journal › Article › peer-review

  Open Access