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Article
Comparing label-free quantitative peptidomics approaches to characterize diurnal variation of peptides in the rat suprachiasmatic nucleus
Southey, B. R., Lee, J. E., Zamdborg, L., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Jan 7 2014, In: Analytical Chemistry. 86, 1, p. 443-452 10 p.Research output: Contribution to journal › Article › peer-review
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Conformational investigation of the structure-activity relationship of GdFFD and its analogues on an achatin-like neuropeptide receptor of: Aplysia californica involved in the feeding circuit
Do, T. D., Checco, J. W., Tro, M., Shea, J. E., Bowers, M. T. & Sweedler, J. V., 2018, In: Physical Chemistry Chemical Physics. 20, 34, p. 22047-22057 11 p.Research output: Contribution to journal › Article › peer-review
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Correction: Spatial organization of Pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy
Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In: Analyst. 139, 22, p. 6058-6060 3 p.Research output: Contribution to journal › Article › peer-review
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Correlated imaging with C60-SIMS and confocal raman microscopy: Visualization of cell-scale molecular distributions in bacterial biofilms
Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Dunham, S. J. B., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 30 2014, In: Analytical chemistry. 86, 21, p. 10885-10891 7 p.Research output: Contribution to journal › Article › peer-review
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D-Alanine in the islets of Langerhans of rat pancreas
Ota, N., Rubakhin, S. S. & Sweedler, J. V., May 2 2014, In: Biochemical and Biophysical Research Communications. 447, 2, p. 328-333 6 p.Research output: Contribution to journal › Article › peer-review
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Deterministic Integration of Biological and Soft Materials onto 3D Microscale Cellular Frameworks
McCracken, J. M., Xu, S., Badea, A., Jang, K. I., Yan, Z., Wetzel, D. J., Nan, K., Lin, Q., Han, M., Anderson, M. A., Lee, J. W., Wei, Z., Pharr, M., Wang, R., Su, J., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Sep 2017, In: Advanced Biosystems. 1, 9, 1700068.Research output: Contribution to journal › Article › peer-review
Open Access -
Differential post-translational amino acid isomerization found among neuropeptides in aplysia californica
Mast, D. H., Checco, J. W. & Sweedler, J. V., Jan 17 2020, In: ACS chemical biology. 15, 1, p. 272-281 10 p.Research output: Contribution to journal › Article › peer-review
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Discovery of leucokinin-like neuropeptides that modulate a specific parameter of feeding motor programs in the molluscan model, Aplysia
Zhang, G., Vilim, F. S., Liu, D. D., Romanova, E. V., Yu, K., Yuan, W. D., Xiao, H., Hummon, A. B., Chen, T. T., Alexeeva, V., Yin, S. Y., Chen, S. A., Cropper, E. C., Sweedler, J. V., Weiss, K. R. & Jing, J., Nov 17 2017, In: Journal of Biological Chemistry. 292, 46, p. 18775-18789 15 p.Research output: Contribution to journal › Article › peer-review
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Discovery of new enzymes and metabolic pathways by using structure and genome context
Zhao, S., Kumar, R., Sakai, A., Vetting, M. W., Wood, B. M. K., Brown, S., Bonanno, J. B., Hillerich, B. S., Seidel, R. D., Babbitt, P. C., Almo, S. C., Sweedler, J. V., Gerlt, J. A., Cronan, J. E. & Jacobson, M. P., 2013, In: Nature. 502, 7473, p. 698-702 5 p.Research output: Contribution to journal › Article › peer-review
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Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms
Rodriguez-Zas, S. L., Wu, C., Southey, B. R., O'Connor, J. C., Nixon, S. E., Garcia, R., Zavala, C., Lawson, M., McCusker, R. H., Romanova, E. V., Sweedler, J. V., Kelley, K. W. & Dantzer, R., Nov 2018, In: Psychoneuroendocrinology. 97, p. 47-58 12 p.Research output: Contribution to journal › Article › peer-review
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Distinguishing endogenous d-amino acid-containing neuropeptides in individual neurons using tandem mass spectrometry
Bai, L., Romanova, E. V. & Sweedler, J. V., Apr 1 2011, In: Analytical Chemistry. 83, 7, p. 2794-2800 7 p.Research output: Contribution to journal › Article › peer-review
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Diversity of conotoxin types from Conus californicus reflects a diversity of prey types and a novel evolutionary history
Elliger, C. A., Richmond, T. A., Lebaric, Z. N., Pierce, N. T., Sweedler, J. V. & Gilly, W. F., Feb 2011, In: Toxicon. 57, 2, p. 311-322 12 p.Research output: Contribution to journal › Article › peer-review
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Dopamine-modified TiO2 monolith-assisted LDI MS imaging for simultaneous localization of small metabolites and lipids in mouse brain tissue with enhanced detection selectivity and sensitivity
Wu, Q., Chu, J. L., Rubakhin, S. S., Gillette, M. U. & Sweedler, J. V., 2017, In: Chemical Science. 8, 5, p. 3926-3938 13 p.Research output: Contribution to journal › Article › peer-review
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Editorial and Review: 29th ASMS Sanibel Conference on Mass Spectrometry—Peptidomics: Bridging the Gap between Proteomics and Metabolomics by MS
Li, L., Andrén, P. E. & Sweedler, J. V., May 1 2018, In: Journal of the American Society for Mass Spectrometry. 29, 5, p. 801-806 6 p.Research output: Contribution to journal › Article › peer-review
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Enhanced single-cell metabolomics by capillary electrophoresis electrospray ionization-mass spectrometry with field amplified sample injection
Liao, H. W., Rubakhin, S., Philip, M. C. & Sweedler, J. V., Jun 29 2020, In: Analytica Chimica Acta. 1118, p. 36-43 8 p.Research output: Contribution to journal › Article › peer-review
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Evaluation of database search programs for accurate detection of neuropeptides in tandem mass spectrometry experiments
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Dec 7 2012, In: Journal of Proteome Research. 11, 12, p. 6044-6055 12 p.Research output: Contribution to journal › Article › peer-review
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Expired Epinephrine Maintains Chemical Concentration and Sterility
Weir, W. B., Fred, L. Y., Pike, M., Rubakhin, S. S., Ludwig, T. J., Shar, A. M., Zhu, L., Frederick, A., Uzoaru, I., Wang, L. & Sweedler, J. V., Jul 4 2018, In: Prehospital Emergency Care. 22, 4, p. 414-418 5 p.Research output: Contribution to journal › Article › peer-review
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Exploring Exercise- and Context-Induced Peptide Changes in Mice by Quantitative Mass Spectrometry
Dowd, S. E., Mustroph, M. L., Romanova, E. V., Southey, B. R., Pinardo, H., Rhodes, J. S. & Sweedler, J. V., Oct 24 2018, In: ACS Omega. 3, 10, p. 13817-13827 11 p.Research output: Contribution to journal › Article › peer-review
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Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry
Monroe, E. B., Annangudi, S. P., Wadhams, A. A., Richmond, T. A., Yang, N., Southey, B. R., Romanova, E. V., Schoofs, L., Baggerman, G. & Sweedler, J. V., May 1 2018, In: Journal of the American Society for Mass Spectrometry. 29, 5, p. 923-934 12 p.Research output: Contribution to journal › Article › peer-review
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Fibrinogen α-chain-derived peptide is upregulated in hippocampus of rats exposed to acute morphine injection and spontaneous alternation testing
Maki, A. E., Morris, K. A., Catherman, K., Chen, X., Hatcher, N. G., Gold, P. E. & Sweedler, J. V., Jun 2014, In: Pharmacology Research and Perspectives. 2, 3, e00037.Research output: Contribution to journal › Article › peer-review
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First survey and functional annotation of prohormone and convertase genes in the pig
Porter, K. I., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., Nov 15 2012, In: BMC genomics. 13, 1, 582.Research output: Contribution to journal › Article › peer-review
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Functional Peptidomics: Stimulus- and Time-of-Day-Specific Peptide Release in the Mammalian Circadian Clock
Atkins, N., Ren, S., Hatcher, N., Burgoon, P. W., Mitchell, J. W., Sweedler, J. V. & Gillette, M. U., Aug 15 2018, In: ACS Chemical Neuroscience. 9, 8, p. 2001-2008 8 p.Research output: Contribution to journal › Article › peer-review
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Gene network dysregulation in the trigeminal ganglia and nucleus accumbens of a model of chronic migraine-associated hyperalgesia
Jeong, H., Moye, L. S., Southey, B. R., Hernandez, A. G., Dripps, I., Romanova, E. V., Rubakhin, S. S., Sweedler, J. V., Pradhan, A. A. & Rodriguez-Zas, S. L., Dec 18 2018, In: Frontiers in Systems Neuroscience. 12, 63.Research output: Contribution to journal › Article › peer-review
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Glial D-serine gates NMDA receptors at excitatory synapses in prefrontal cortex
Fossat, P., Turpin, F. R., Sacchi, S., Dulong, J., Shi, T., Rivet, J. M., Sweedler, J. V., Pollegioni, L., Millan, M. J., Oliet, S. H. R. & Mothet, J. P., Mar 2012, In: Cerebral Cortex. 22, 3, p. 595-606 12 p.Research output: Contribution to journal › Article › peer-review
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Identification of best indicators of peptide-spectrum match using a permutation resampling approach
Akhtar, M. N., Southey, B. R., Andrén, P. E., Sweedler, J. V. & Rodriguez-Zas, S. L., Oct 30 2014, In: Journal of Bioinformatics and Computational Biology. 12, 5, 1440001.Research output: Contribution to journal › Article › peer-review
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Improved identification and quantitation of mature endogenous peptides in the rodent hypothalamus using a rapid conductive sample heating system
Yang, N., Anapindi, K. D. B., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Dec 7 2017, In: Analyst. 142, 23, p. 4476-4485 10 p.Research output: Contribution to journal › Article › peer-review
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Interrogation of spatial metabolome of Ginkgo biloba with high-resolution matrix-assisted laser desorption/ionization and laser desorption/ionization mass spectrometry imaging
Li, B., Neumann, E. K., Ge, J., Gao, W., Yang, H., Li, P. & Sweedler, J. V., Nov 2018, In: Plant Cell and Environment. 41, 11, p. 2693-2703 11 p.Research output: Contribution to journal › Article › peer-review
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Label-free quantitation of peptide release from neurons in a microfluidic device with mass spectrometry imaging
Zhong, M., Lee, C. Y., Croushore, C. A. & Sweedler, J. V., May 8 2012, In: Lab on a chip. 12, 11, p. 2037-2045 9 p.Research output: Contribution to journal › Article › peer-review
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Laminar stream of detergents for subcellular neurite damage in a microfluidic device: A simple tool for the study of neuroregeneration
Lee, C. Y., Romanova, E. V. & Sweedler, J. V., Jun 2013, In: Journal of Neural Engineering. 10, 3, 036020.Research output: Contribution to journal › Article › peer-review
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Lipid Analysis of 30 000 Individual Rodent Cerebellar Cells Using High-Resolution Mass Spectrometry
Neumann, E. K., Ellis, J. F., Triplett, A. E., Rubakhin, S. S. & Sweedler, J. V., Jan 1 2019, In: Analytical Chemistry.Research output: Contribution to journal › Article › peer-review
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Lipid Heterogeneity between Astrocytes and Neurons Revealed by Single-Cell MALDI-MS Combined with Immunocytochemical Classification
Neumann, E. K., Comi, T. J., Rubakhin, S. S. & Sweedler, J. V., Apr 23 2019, In: Angewandte Chemie - International Edition. 58, 18, p. 5910-5914 5 p.Research output: Contribution to journal › Article › peer-review
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MALDI-guided SIMS: Multiscale imaging of metabolites in bacterial biofilms
Lanni, E. J., Masyuko, R. N., Driscoll, C. M., Aerts, J. T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., Sep 1 2014, In: Analytical Chemistry. 86, 18, p. 9139-9145 7 p.Research output: Contribution to journal › Article › peer-review
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MALDI mass spectrometry imaging of neuronal cell cultures
Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., May 2011, In: Journal of the American Society for Mass Spectrometry. 22, 5, p. 828-836 9 p.Research output: Contribution to journal › Article › peer-review
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MALDI MS Guided Liquid Microjunction Extraction for Capillary Electrophoresis-Electrospray Ionization MS Analysis of Single Pancreatic Islet Cells
Comi, T. J., Makurath, M. A., Philip, M. C., Rubakhin, S. S. & Sweedler, J. V., Jul 18 2017, In: Analytical Chemistry. 89, 14, p. 7765-7772 8 p.Research output: Contribution to journal › Article › peer-review
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Mass spectrometry imaging of complex microbial communities
Dunham, S. J. B., Ellis, J. F., Li, B. & Sweedler, J. V., Jan 17 2017, In: Accounts of chemical research. 50, 1, p. 96-104 9 p.Research output: Contribution to journal › Article › peer-review
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Mechanical tension modulates local and global vesicle dynamics in neurons
Ahmed, W. W., Li, T. C., Rubakhin, S. S., Chiba, A., Sweedler, J. V. & Saif, T. A., Jun 2012, In: Cellular and Molecular Bioengineering. 5, 2, p. 155-164 10 p.Research output: Contribution to journal › Article › peer-review
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Metabolic differentiation of neuronal phenotypes by single-cell capillary electrophoresis-electrospray ionization-mass spectrometry
Nemes, P., Knolhoff, A. M., Rubakhin, S. S. & Sweedler, J. V., Sep 1 2011, In: Analytical chemistry. 83, 17, p. 6810-6817 8 p.Research output: Contribution to journal › Article › peer-review
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Mice deficient in endothelin-converting enzyme-2 exhibit abnormal responses to morphine and altered peptide levels in the spinal cord
Miller, L. K., Hou, X., Rodriguiz, R. M., Gagnidze, K., Sweedler, J. V., Wetsel, W. C. & Devi, L. A., Dec 2011, In: Journal of Neurochemistry. 119, 5, p. 1074-1085 12 p.Research output: Contribution to journal › Article › peer-review
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Microfluidic device for the selective chemical stimulation of neurons and characterization of peptide release with mass spectrometry
Croushore, C. A., Supharoek, S. A., Lee, C. Y., Jakmunee, J. & Sweedler, J. V., Nov 6 2012, In: Analytical Chemistry. 84, 21, p. 9446-9452 7 p.Research output: Contribution to journal › Article › peer-review
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microMS: A Python Platform for Image-Guided Mass Spectrometry Profiling
Comi, T. J., Neumann, E. K., Do, T. D. & Sweedler, J. V., Sep 1 2017, In: Journal of the American Society for Mass Spectrometry. 28, 9, p. 1919-1928 10 p.Research output: Contribution to journal › Article › peer-review
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Molecular and Physiological Characterization of a Receptor for d -Amino Acid-Containing Neuropeptides
Checco, J. W., Zhang, G., Yuan, W. D., Yu, K., Yin, S. Y., Roberts-Galbraith, R. H., Yau, P. M., Romanova, E. V., Jing, J. & Sweedler, J. V., May 18 2018, In: ACS chemical biology. 13, 5, p. 1343-1352 10 p.Research output: Contribution to journal › Article › peer-review
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Molecular organization of drosophila neuroendocrine cells by dimmed
Park, D., Hadžić, T., Yin, P., Rusch, J., Abruzzi, K., Rosbash, M., Skeath, J. B., Panda, S., Sweedler, J. V. & Taghert, P. H., Sep 27 2011, In: Current Biology. 21, 18, p. 1515-1524 10 p.Research output: Contribution to journal › Article › peer-review
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Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol
Park, H. M., Satta, R., Davis, R. G., Goo, Y. A., Leduc, R. D., Fellers, R. T., Greer, J. B., Romanova, E. V., Rubakhin, S. S., Tai, R., Thomas, P. M., Sweedler, J. V., Kelleher, N. L., Patrie, S. M. & Lasek, A. W., Nov 1 2019, In: Journal of Proteome Research. 18, 11, p. 3999-4012 14 p.Research output: Contribution to journal › Article › peer-review
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Multifactorial understanding of ion abundance in tandem mass spectrometry experiments
Fazal, Z., Southey, B. R., Sweedler, J. V. & Rodriguez-Zas, S. L., 2013, In: Journal of Proteomics and Bioinformatics. 6, 2, p. 23-29 7 p.Research output: Contribution to journal › Article › peer-review
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Multimodal Chemical Analysis of the Brain by High Mass Resolution Mass Spectrometry and Infrared Spectroscopic Imaging
Neumann, E. K., Comi, T. J., Spegazzini, N., Mitchell, J. W., Rubakhin, S. S., Gillette, M. U., Bhargava, R. & Sweedler, J. V., Oct 2 2018, In: Analytical Chemistry. 90, 19, p. 11572-11580 9 p.Research output: Contribution to journal › Article › peer-review
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Neuropeptidomics of the Rat Habenular Nuclei
Yang, N., Anapindi, K. D. B., Rubakhin, S. S., Wei, P., Yu, Q., Li, L., Kenny, P. J. & Sweedler, J. V., Apr 6 2018, In: Journal of Proteome Research. 17, 4, p. 1463-1473 11 p.Research output: Contribution to journal › Article › peer-review
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Newly Identified Aplysia SPTR-Gene Family-Derived Peptides: Localization and Function
Zhang, G., Yuan, W. D., Vilim, F. S., Romanova, E. V., Yu, K., Yin, S. Y., Le, Z. W., Xue, Y. Y., Chen, T. T., Chen, G. K., Chen, S. A., Cropper, E. C., Sweedler, J. V., Weiss, K. R. & Jing, J., Aug 15 2018, In: ACS Chemical Neuroscience. 9, 8, p. 2041-2053 13 p.Research output: Contribution to journal › Article › peer-review
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Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens
Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In: Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.Research output: Contribution to journal › Article › peer-review
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Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins
Do, T. D., Ellis, J. F., Neumann, E. K., Comi, T. J., Tillmaand, E. G., Lenhart, A. E., Rubakhin, S. S. & Sweedler, J. V., May 22 2018, In: ChemPhysChem. 19, 10, p. 1180-1191 12 p.Research output: Contribution to journal › Article › peer-review
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PACAP and other neuropeptide targets link chronic migraine and opioid-induced hyperalgesia in mouse models
Anapindi, K. D. B., Yang, N., Romanova, E. V., Rubakhin, S. S., Tipton, A., Dripps, I., Sheets, Z., Sweedler, J. V. & Pradhan, A. A., 2019, In: Molecular and Cellular Proteomics. 18, 12, p. 2447-2458 12 p.Research output: Contribution to journal › Article › peer-review