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  • Jonathan V Sweedler
Article

Multimodal chemical imaging of molecular messengers in emerging Pseudomonas aeruginosa bacterial communities

Baig, N. F., Dunham, S. J. B., Morales-Soto, N., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 7 2015, In : Analyst. 140, 19, p. 6544-6552 9 p.

Research output: Contribution to journalArticle

Nanofluidics in chemical analysis

Piruska, A., Gong, M., Sweedler, J. V. & Bohn, P. W., Feb 24 2010, In : Chemical Society Reviews. 39, 3, p. 1060-1072 13 p.

Research output: Contribution to journalArticle

Neuropeptide release is impaired in a mouse model of fragile x mental retardation syndrome

Annangudi, S. P., Luszpak, A. E., Kim, S. H., Ren, S., Hatcher, N. G., Weiler, I. J., Thornley, K. T., Kile, B. M., Wightman, R. M., Greenough, W. T. & Sweedler, J. V., Apr 21 2010, In : ACS Chemical Neuroscience. 1, 4, p. 306-314 9 p.

Research output: Contribution to journalArticle

Neuropeptidomics of the Rat Habenular Nuclei

Yang, N., Anapindi, K. D. B., Rubakhin, S. S., Wei, P., Yu, Q., Li, L., Kenny, P. J. & Sweedler, J. V., Apr 6 2018, In : Journal of Proteome Research. 17, 4, p. 1463-1473 11 p.

Research output: Contribution to journalArticle

Newly Identified Aplysia SPTR-Gene Family-Derived Peptides: Localization and Function

Zhang, G., Yuan, W. D., Vilim, F. S., Romanova, E. V., Yu, K., Yin, S. Y., Le, Z. W., Xue, Y. Y., Chen, T. T., Chen, G. K., Chen, S. A., Cropper, E. C., Sweedler, J. V., Weiss, K. R. & Jing, J., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 2041-2053 13 p.

Research output: Contribution to journalArticle

Optically Guided Single Cell Mass Spectrometry of Rat Dorsal Root Ganglia to Profile Lipids, Peptides and Proteins

Do, T. D., Ellis, J. F., Neumann, E. K., Comi, T. J., Tillmaand, E. G., Lenhart, A. E., Rubakhin, S. S. & Sweedler, J. V., May 22 2018, In : ChemPhysChem. 19, 10, p. 1180-1191 12 p.

Research output: Contribution to journalArticle

Patch clamp electrophysiology and capillary electrophoresis-mass spectrometry metabolomics for single cell characterization

Aerts, J. T., Louis, K. R., Crandall, S. R., Govindaiah, G., Cox, C. L. & Sweedler, J. V., 2014, In : Analytical chemistry. 86, 6, p. 3203-3208 6 p.

Research output: Contribution to journalArticle

Peptide identifications and false discovery rates using different mass spectrometry platforms

Anapindi, K. D. B., Romanova, E. V., Southey, B. R. & Sweedler, J. V., May 15 2018, In : Talanta. 182, p. 456-463 8 p.

Research output: Contribution to journalArticle

Peptidomics and Secretomics of the Mammalian Peripheral Sensory-Motor System

Tillmaand, E. G., Yang, N., Kindt, C. A. C., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Dec 1 2015, In : Journal of the American Society for Mass Spectrometry. 26, 12, p. 2051-2061 11 p.

Research output: Contribution to journalArticle

Prediction and biochemical demonstration of a catabolic pathway for the osmoprotectant proline betaine

Kumar, R., Zhao, S., Vetting, M. W., Wood, B. M. K., Sakai, A., Cho, K., Solbiati, J., Almo, S. C., Sweedler, J. V., Jacobson, M. P., Gerlt, J. A. & Cronan, J. E., Feb 11 2014, In : mBio. 5, 1, e00933-13.

Research output: Contribution to journalArticle

Preface

Rubakhin, S. & Sweedler, J. V., Dec 1 2010, In : Methods in Molecular Biology. 656

Research output: Contribution to journalArticle

Production of nitric oxide within the aplysia californica nervous system

Ye, X., Xie, F., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Mar 17 2010, In : ACS Chemical Neuroscience. 1, 3, p. 182-193 12 p.

Research output: Contribution to journalArticle

Quantitative neuroproteomics of the synapse.

Ramos-Ortolaza, D. L., Bushlin, I., Abul-Husn, N., Annangudi, S. P., Sweedler, J. & Devi, L. A., 2010, In : Methods in molecular biology (Clifton, N.J.). 615, p. 227-246 20 p.

Research output: Contribution to journalArticle

Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus

Lee, J. E., Zamdborg, L., Southey, B. R., Atkins, N., Mitchell, J. W., Li, M., Gillette, M. U., Kelleher, N. L. & Sweedler, J. V., Feb 1 2013, In : Journal of Proteome Research. 12, 2, p. 585-593 9 p.

Research output: Contribution to journalArticle

Quantitative reflection imaging of fixed aplysia californica pedal ganglion neurons on nanostructured plasmonic crystals

Le, A. P., Kang, S., Thompson, L. B., Rubakhin, S. S., Sweedler, J. V., Rogers, J. A. & Nuzzo, R. G., Nov 4 2013, In : Journal of Physical Chemistry B. 117, 42, p. 13069-13081 13 p.

Research output: Contribution to journalArticle

Quantitative SIMS Imaging of Agar-Based Microbial Communities

Dunham, S. J. B., Ellis, J. F., Baig, N. F., Morales-Soto, N., Cao, T., Shrout, J. D., Bohn, P. W. & Sweedler, J. V., May 1 2018, In : Analytical chemistry. 90, 9, p. 5654-5663 10 p.

Research output: Contribution to journalArticle

Rapid mitogenic regulation of the mTORC1 Inhibitor, DEPTOR, by phosphatidic acid

Yoon, M. S., Rosenberger, C. L., Wu, C., Truong, N., Sweedler, J. V. & Chen, J., May 7 2015, In : Molecular cell. 58, 3, p. 549-556 8 p.

Research output: Contribution to journalArticle

Rapid Screening of Lanthipeptide Analogs via In-Colony Removal of Leader Peptides in Escherichia coli

Si, T., Tian, Q., Min, Y., Zhang, L., Sweedler, J. V., Van Der Donk, W. A. & Zhao, H., Sep 26 2018, In : Journal of the American Chemical Society. 140, 38, p. 11884-11888 5 p.

Research output: Contribution to journalArticle

Serotonin and its metabolism in basal deuterostomes: Insights from Strongylocentrotus purpuratus and Xenoturbella bocki

Squires, L. N., Rubakhin, S. S., Wadhams, A. A., Talbot, K. N., Nakano, H., Moroz, L. L. & Sweedler, J. V., Aug 1 2010, In : Journal of Experimental Biology. 213, 15, p. 2647-2654 8 p.

Research output: Contribution to journalArticle

Signals from the Brainstem Sleep/Wake Centers Regulate Behavioral Timing via the Circadian Clock

Abbott, S. M., Arnold, J. M., Chang, Q., Miao, H., Ota, N., Cecala, C., Gold, P. E., Sweedler, J. V. & Gillette, M. U., Aug 12 2013, In : PloS one. 8, 8, e70481.

Research output: Contribution to journalArticle

Single Cell Peptide Heterogeneity of Rat Islets of Langerhans

Jansson, E. T., Comi, T. J., Rubakhin, S. S. & Sweedler, J. V., Sep 16 2016, In : ACS chemical biology. 11, 9, p. 2588-2595 8 p.

Research output: Contribution to journalArticle

Single Cell Profiling Using Ionic Liquid Matrix-Enhanced Secondary Ion Mass Spectrometry for Neuronal Cell Type Differentiation

Do, T. D., Comi, T. J., Dunham, S. J. B., Rubakhin, S. S. & Sweedler, J. V., Mar 7 2017, In : Analytical chemistry. 89, 5, p. 3078-3086 9 p.

Research output: Contribution to journalArticle

Single Synaptic Observation of Cholinergic Neurotransmission on Living Neurons: Concentration and Dynamics

Shen, M., Qu, Z., Deslaurier, J., Welle, T. M., Sweedler, J. V. & Chen, R., Jun 27 2018, In : Journal of the American Chemical Society. 140, 25, p. 7764-7768 5 p.

Research output: Contribution to journalArticle

Spatial correlation of confocal raman scattering and secondary ion mass spectrometric molecular images of lignocellulosic materials

Li, Z., Chu, L. Q., Sweedler, J. V. & Bohn, P. W., Apr 1 2010, In : Analytical chemistry. 82, 7, p. 2608-2611 4 p.

Research output: Contribution to journalArticle

Spatially dependent alkyl quinolone signaling responses to antibiotics in Pseudomonas aeruginosa swarms

Morales-Soto, N., Dunham, S. J. B., Baig, N. F., Ellis, J. F., Madukoma, C. S., Bohn, P. W., Sweedler, J. V. & Shrout, J. D., Jun 15 2018, In : Journal of Biological Chemistry. 293, 24, p. 9544-9552 9 p.

Research output: Contribution to journalArticle

Spatial organization of pseudomonas aeruginosa biofilms probed by combined matrix-assisted laser desorption ionization mass spectrometry and confocal raman microscopy

Masyuko, R. N., Lanni, E. J., Driscoll, C. M., Shrout, J. D., Sweedler, J. V. & Bohn, P. W., Oct 15 2014, In : Analyst. 139, 22, p. 5700-5708 9 p.

Research output: Contribution to journalArticle

Stimulation and release from neurons via a dual capillary collection device interfaced to mass spectrometry

Fan, Y., Lee, C. Y., Rubakhin, S. S. & Sweedler, J. V., Nov 7 2013, In : Analyst. 138, 21, p. 6337-6346 10 p.

Research output: Contribution to journalArticle

Storage and uptake of D-serine into astrocytic synaptic-like vesicles specify gliotransmission

Martineau, M., Shi, T., Puyal, J., Knolhoff, A. M., Dulong, J., Gasnier, B., Klingauf, J., Sweedler, J. V., Jahn, R. & Mothet, J. P., Feb 20 2013, In : Journal of Neuroscience. 33, 8, p. 3413-3423 11 p.

Research output: Contribution to journalArticle

Synthesis, accumulation, and release of d-aspartate in the Aplysia californica CNS

Scanlan, C., Shi, T., Hatcher, N. G., Rubakhin, S. S. & Sweedler, J. V., Dec 2010, In : Journal of Neurochemistry. 115, 5, p. 1234-1244 11 p.

Research output: Contribution to journalArticle

The ctenophore genome and the evolutionary origins of neural systems

Moroz, L. L., Kocot, K. M., Citarella, M. R., Dosung, S., Norekian, T. P., Povolotskaya, I. S., Grigorenko, A. P., Dailey, C., Berezikov, E., Buckley, K. M., Ptitsyn, A., Reshetov, D., Mukherjee, K., Moroz, T. P., Bobkova, Y., Yu, F., Kapitonov, V. V., Jurka, J., Bobkov, Y. V., Swore, J. J. & 16 others, Girardo, D. O., Fodor, A., Gusev, F., Sanford, R., Bruders, R., Kittler, E., Mills, C. E., Rast, J. P., Derelle, R., Solovyev, V. V., Kondrashov, F. A., Swalla, B. J., Sweedler, J. V., Rogaev, E. I., Halanych, K. M. & Kohn, A. B., 2014, In : Nature. 510, 7503, p. 109-114 6 p.

Research output: Contribution to journalArticle

The effects of aging on biosynthetic processes in the rat hypothalamic osmoregulatory neuroendocrine system

Greenwood, M. P., Greenwood, M., Romanova, E. V., Mecawi, A. S., Paterson, A., Sarenac, O., Japundžić-Žigon, N., Antunes-Rodrigues, J., Paton, J. F. R., Sweedler, J. V. & Murphy, D., May 2018, In : Neurobiology of Aging. 65, p. 178-191 14 p.

Research output: Contribution to journalArticle

The genome of a songbird

Warren, W. C., Clayton, D. F., Ellegren, H., Arnold, A. P., Hillier, L. W., Künstner, A., Searle, S., White, S., Vilella, A. J., Fairley, S., Heger, A., Kong, L., Ponting, C. P., Jarvis, E. D., Mello, C. V., Minx, P., Lovell, P., Velho, T. A. F., Ferris, M., Balakrishnan, C. N. & 62 others, Sinha, S., Blatti, C., London, S. E., Li, Y., Lin, Y. C., George, J., Sweedler, J., Southey, B., Gunaratne, P., Watson, M., Nam, K., Backström, N., Smeds, L., Nabholz, B., Itoh, Y., Whitney, O., Pfenning, A. R., Howard, J., Völker, M., Skinner, B. M., Griffin, D. K., Ye, L., McLaren, W. M., Flicek, P., Quesada, V., Velasco, G., Lopez-Otin, C., Puente, X. S., Olender, T., Lancet, D., Smit, A. F. A., Hubley, R., Konkel, M. K., Walker, J. A., Batzer, M. A., Gu, W., Pollock, D. D., Chen, L., Cheng, Z., Eichler, E. E., Stapley, J., Slate, J., Ekblom, R., Birkhead, T., Burke, T., Burt, D., Scharff, C., Adam, I., Richard, H., Sultan, M., Soldatov, A., Lehrach, H., Edwards, S. V., Yang, S. P., Li, X., Graves, T., Fulton, L., Nelson, J., Chinwalla, A., Hou, S., Mardis, E. R. & Wilson, R. K., Apr 1 2010, In : Nature. 464, 7289, p. 757-762 6 p.

Research output: Contribution to journalArticle

The zebra finch neuropeptidome: Prediction, detection and expression

Xie, F., London, S. E., Southey, B. R., Annangudi, S. P., Amare, A., Rodriguez-Zas, S. L., Clayton, D. F. & Sweedler, J. V., Apr 1 2010, In : BMC biology. 8, 28.

Research output: Contribution to journalArticle

Three-dimensional mesostructures as high-temperature growth templates, electronic cellular scaffolds, and self-propelled microrobots

Yan, Z., Han, M., Shi, Y., Badea, A., Yang, Y., Kulkarni, A., Hanson, E., Kandel, M. E., Wen, X., Zhang, F., Luo, Y., Lin, Q., Zhang, H., Guo, X., Huang, Y., Nan, K., Jia, S., Oraham, A. W., Mevis, M. B., Lim, J. & 19 others, Guo, X., Gao, M., Ryu, W., Yu, K. J., Nicolau, B. G., Petronico, A., Rubakhin, S. S., Lou, J., Ajayan, P. M., Thornton, K., Popescu, G., Fang, D., Sweedler, J. V., Braun, P. V., Zhang, H., Nuzzo, R. G., Huang, Y., Zhang, Y. & Rogers, J. A., Nov 7 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 45, p. E9455-E9464

Research output: Contribution to journalArticle

Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms between Mouse Strains

Davis, R. G., Park, H. M., Kim, K., Greer, J. B., Fellers, R. T., Leduc, R. D., Romanova, E. V., Rubakhin, S. S., Zombeck, J. A., Wu, C., Yau, P. M., Gao, P., Van Nispen, A. J., Patrie, S. M., Thomas, P. M., Sweedler, J. V., Rhodes, J. S. & Kelleher, N. L., Mar 20 2018, In : Analytical chemistry. 90, 6, p. 3802-3810 9 p.

Research output: Contribution to journalArticle

Transcriptional Orchestration of the Regulated Secretory Pathway in Neurons by the bHLH protein DIMM

Hamanaka, Y., Park, D., Yin, P., Annangudi, S. P., Edwards, T. N., Sweedler, J., Meinertzhagen, I. A. & Taghert, P. H., Jan 12 2010, In : Current Biology. 20, 1, p. 9-18 10 p.

Research output: Contribution to journalArticle