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• Article

  Optogenetic skeletal muscle-powered adaptive biological machines

  Raman, R., Cvetkovic, C., Uzel, S. G. M., Platt, R. J., Sengupta, P., Kamm, R. D. & Bashir, R., Mar 29 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3497-3502 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Optogenetics
  • Bioengineering
  • Skeleton
  • Locomotion
  • Skeletal Muscle

• Optomechanical measurement of the stiffness of single adherent cells

  Park, K., Mehrnezhad, A., Corbin, E. A. & Bashir, R., Jul 14 2015, In: Lab on a chip. 15, 17, p. 3460-3464 5 p.

  Research output: Contribution to journal › Article › peer-review

  • Substrates
  • Stiffness
  • Mechanical properties
  • Phase shift
  • Lasers

• Optomechanical microrheology of single adherent cancer cells

  Adeniba, O. O., Corbin, E. A., Ewoldt, R. H. & Bashir, R., Mar 1 2018, In: APL Bioengineering. 2, 1, 016108.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Cells
  • Viscoelastic Substances
  • Cell membranes
  • Soft materials
  • Mechanical properties

• Perspective: The promise of multi-cellular engineered living systems

  Kamm, R. D., Bashir, R., Arora, N., Dar, R. D., Gillette, M. U., Griffith, L. G., Kemp, M. L., Kinlaw, K., Levin, M., Martin, A. C., McDevitt, T. C., Nerem, R. M., Powers, M. J., Saif, T. A., Sharpe, J., Takayama, S., Takeuchi, S., Weiss, R., Ye, K., Yevick, H. G. & 1 others, Zaman, M. H., Dec 1 2018, In: APL Bioengineering. 2, 4, 040901.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Bioprinting
  • Cytology
  • Stem cells
  • Organoids
  • Assays

• Photopatterning of hydrogel scaffolds coupled to filter materials using stereolithography for perfused 3D culture of hepatocytes

  Neiman, J. A. S., Raman, R., Chan, V., Rhoads, M. G., Raredon, M. S. B., Velazquez, J. J., Dyer, R. L., Bashir, R., Hammond, P. T. & Griffith, L. G., Apr 1 2015, In: Biotechnology and bioengineering. 112, 4, p. 777-787 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Hepatocytes
  • Stereolithography
  • Hydrogels
  • Scaffolds
  • Polyethylene Glycol Dimethacrylate Hydrogel

• Pixelated spatial gene expression analysis from tissue

  Ganguli, A., Ornob, A., Spegazzini, N., Liu, Y., Damhorst, G., Ghonge, T., Thornton, B., Konopka, C. J., Dobrucki, W., Clare, S. E., Bhargava, R., Smith, A. M., Kosari, F. & Bashir, R., Dec 1 2018, In: Nature communications. 9, 1, 202.

  Research output: Contribution to journal › Article › peer-review

  • gene expression
  • Gene expression
  • Tissue
  • ribonucleic acids
  • Amplification

• Resonant MEMS mass sensors for measurement of microdroplet evaporation

  Park, K., Kim, N., Morisette, D. T., Aluru, N. R. & Bashir, R., Apr 5 2012, In: Journal of Microelectromechanical Systems. 21, 3, p. 702-711 10 p., 6176181.

  Research output: Contribution to journal › Article › peer-review

  • Evaporation
  • MEMS
  • Sensors
  • Dimethyl sulfoxide
  • Self assembly

• Robust label-free microRNA detection using one million ISFET array

  Ganguli, A., Watanabe, Y., Hwang, M. T., Huang, J. C. & Bashir, R., Jun 2 2018, In: Biomedical microdevices. 20, 2, 1 p.

  Research output: Contribution to journal › Article › peer-review

  • Ion sensitive field effect transistors
  • Nucleic acids
  • Assays
  • Nucleic Acids
  • Molecules

• Silicon nanowires with high-k hafnium oxide dielectrics for sensitive detection of small nucleic acid oligomers

  Dorvel, B. R., Reddy, B., Go, J., Duarte Guevara, C., Salm, E., Alam, M. A. & Bashir, R., Jul 24 2012, In: ACS Nano. 6, 7, p. 6150-6164 15 p.

  Research output: Contribution to journal › Article › peer-review

  • hafnium oxide
  • Hafnium oxides
  • Nucleic acids
  • Oligomers
  • hafnium oxides

• Simulation and Fabrication of Stronger, Larger, and Faster Walking Biohybrid Machines

  Pagan-Diaz, G. J., Zhang, X., Grant, L., Kim, Y., Aydin, O., Cvetkovic, C., Ko, E., Solomon, E., Hollis, J., Kong, H., Saif, T., Gazzola, M. & Bashir, R., Jun 6 2018, In: Advanced Functional Materials. 28, 23, 1801145.

  Research output: Contribution to journal › Article › peer-review

  • walking machines
  • Scaffolds
  • Tissue
  • Robotics
  • Actuators

• Slowing DNA transport using graphene-DNA interactions

  Banerjee, S., Wilson, J., Shim, J., Shankla, M., Corbin, E. A., Aksimentiev, A. & Bashir, R., Feb 11 2015, In: Advanced Functional Materials. 25, 6, p. 936-946 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Graphite
  • Graphene
  • Nanopores
  • graphene
  • interactions

• Smartphone-Imaged HIV-1 Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) on a Chip from Whole Blood

  Damhorst, G. L., Duarte-Guevara, C., Chen, W., Ghonge, T., Cunningham, B. T. & Bashir, R., Sep 1 2015, In: Engineering. 1, 3, p. 324-335 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Viruses
  • Transcription
  • Amplification
  • Smartphones
  • Blood

• Stacked graphene-Al ₂O ₃ nanopore sensors for sensitive detection of DNA and DNA-protein complexes

  Venkatesan, B. M., Estrada, D., Banerjee, S., Jin, X., Dorgan, V. E., Bae, M. H., Aluru, N. R., Pop, E. & Bashir, R., Jan 24 2012, In: ACS Nano. 6, 1, p. 441-450 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanopores
  • Graphite
  • Graphene
  • DNA
  • Proteins

• Three-dimensionally printed biological machines powered by skeletal muscle

  Cvetkovic, C., Raman, R., Chan, V., Williams, B. J., Tolish, M., Bajaj, P., Sakar, M. S., Asada, H. H., Saif, M. T. A. & Bashir, R., Jul 15 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 28, p. 10125-10130 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Skeletal Muscle
  • Polyethylene Glycol Dimethacrylate Hydrogel
  • Locomotion
  • Electric Power Supplies
  • Three-Dimensional Printing

• Tip-based nanofabrication of arbitrary shapes of graphene nanoribbons for device applications

  Hu, H., Banerjee, S., Estrada, D., Bashir, R. & King, W. P., 2015, In: RSC Advances. 5, 46, p. 37006-37012 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nanoribbons
  • Graphite
  • Carbon Nanotubes
  • Graphene
  • Nanotechnology
• Chapter

  Impedance microbiology and microbial screening strategy for detecting pathogens in food

  Flint, S., Naila, A. & Bashir, R., Jan 1 2015, High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 285-300 16 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Microbiology
  • Pathogens
  • food pathogens
  • microbiology
  • Electric Impedance

• Stereolithographic 3D bioprinting for biomedical applications

  Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Bioprinting
  • Stereolithography
  • Medical applications
  • Regenerative Medicine
  • Fabrication
• Conference article

  A semiconductor bio-electrical platform with addressable thermal control circuits for accelerated bioassay development

  Chen, T. T., Wen, C. H., Huang, J. C., Peng, Y. C., Liu, S., Su, S. H., Cheng, L. H., Lai, H. C., Liao, T. C., Lai, F. L., Cheng, C. W., Yang, C. K., Yang, J. H., Hsieh, Y. J., Salm, E., Reddy, B., Tsui, F., Liu, Y. S., Bashir, R. & Chen, M., Feb 20 2015, In: Technical Digest - International Electron Devices Meeting, IEDM. 2015-February, February, p. 15.4.1-15.4.4 7047058.

  Research output: Contribution to journal › Conference article › peer-review

  • Bioassay
  • bioassay
  • Semiconductor materials
  • platforms
  • pixels
• Conference contribution

  3-D biofabrication using stereolithography for biology and medicine

  Bajaj, P., Chan, V., Jeong, J. H., Zorlutuna, P., Kong, H. & Bashir, R., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 6805-6808 4 p. 6347557. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Stereolithography
  • Medicine
  • Electrophoresis
  • Tissue engineering
  • Scaffolds

• Electrical flow metering of blood for point-of-care diagnostics

  Watkins, N., Hassan, U., Rodriguez, W. & Bashir, R., Dec 14 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 3255-3257 3 p. 6346659. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Point-of-Care Systems
  • Blood
  • Microfluidics
  • Microelectrodes
  • Leukocyte Count

• Graphene nanopores for nucleic acid analysis

  Shim, J., Solovyeva, V., Estrada, D., Banerjee, S., Rivera, J., Pop, E. & Bashir, R., 2012, 2012 12th IEEE International Conference on Nanotechnology, NANO 2012. 6322237

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nanopores
  • Nucleic acids
  • Graphite
  • nucleic acids
  • Graphene

• HIV-1 IIIB capture from whole blood on magnetic microparticles

  Damhorst, G. L., Kooiman, J. M. & Bashir, R., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 5785-5788 4 p. 7592042. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Antibodies
  • Blood
  • Proteins
  • HIV-1
  • Drug therapy

• Improved graphene growth and fluorination on Cu with clean transfer to surfaces

  Wood, J. D., Schmucker, S. W., Haasch, R. T., Doidge, G. P., Nienhaus, L., Damhorst, G. L., Lyons, A. S., Gruebele, M., Bashir, R., Pop, E. & Lyding, J. W., Nov 22 2012, 2012 12th IEEE International Conference on Nanotechnology, NANO 2012. 6322101. (Proceedings of the IEEE Conference on Nanotechnology).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Fluorination
  • fluorination
  • Graphite
  • Graphene
  • graphene

• Integrated 'lab-on-a-transistor': With droplets-in-air for parallel nanoliter reactions

  Salm, E., Duarte, C., Jokilaakso, N. & Bashir, R., Jan 1 2012, Proceedings of the 16th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2012. Chemical and Biological Microsystems Society, p. 1945-1947 3 p. (Proceedings of the 16th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2012).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Transistors
  • Air
  • Heating
  • Thermal cycling
  • Sensors

• Integrated lab on chip for detection of cells and micro-organisms

  Salm, E., Duarte, C. & Bashir, R., Dec 1 2012, 2012 IEEE Photonics Conference, IPC 2012. p. 145-146 2 p. 6358531. (2012 IEEE Photonics Conference, IPC 2012).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Transistors
  • Field effect transistors
  • Lab-on-a-chip
  • Hybrid sensors
  • Nucleic acids

• Mechanical communication between cardiac cell leads to synchrony in beating

  Tang, X., Bajaj, P., Bashir, R. & Saif, T., Dec 1 2012, ASME 2012 Summer Bioengineering Conference, SBC 2012. p. 333-334 2 p. (ASME 2012 Summer Bioengineering Conference, SBC 2012).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Elastic moduli
  • Stiffness
  • Communication

• Mobile biosensing using the sensing capabilities of smartphone cameras

  Cunningham, B. T., Long, K. D., Yu, H., Chen, W., Sun, F., Ornob, A., Ganguli, A., Lumetta, S. & Bashir, R., Jan 4 2018, 2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-3 3 p. (2017 IEEE MTT-S International Microwave Workshop Series on Advanced Materials and Processes for RF and THz Applications, IMWS-AMP 2017; vol. 2018-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Smartphones
  • cameras
  • Image processing
  • Health
  • Cameras

• Nanopore sensors for DNA analysis

  Solovyeva, V., Venkatesan, B. M., Shim, J., Banerjee, S., Rivera, J. & Bashir, R., Jul 23 2012, Micro- and Nanotechnology Sensors, Systems, and Applications IV. 83730O. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8373).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nanopore
  • Nanopores
  • Sensor
  • DNA
  • deoxyribonucleic acid
• Review article

  3D biofabrication strategies for tissue engineering and regenerative medicine

  Bajaj, P., Schweller, R. M., Khademhosseini, A., West, J. L. & Bashir, R., Jul 2014, In: Annual Review of Biomedical Engineering. 16, p. 247-276 30 p.

  Research output: Contribution to journal › Review article › peer-review

  • Regenerative Medicine
  • Tissue engineering
  • Biomaterials
  • Biocompatible Materials
  • Tissue Engineering

• 3D printing for preoperative planning and surgical training: a review

  Ganguli, A., Pagan-Diaz, G. J., Grant, L., Cvetkovic, C., Bramlet, M., Vozenilek, J., Kesavadas, T. & Bashir, R., Sep 1 2018, In: Biomedical microdevices. 20, 3, 65.

  Research output: Contribution to journal › Review article › peer-review

  • Three-Dimensional Printing
  • Printing
  • Audiovisual Aids
  • Planning
  • Diagnostic Imaging

• Droplet-based biosensing for lab-on-a-chip, open microfluidics platforms

  Dak, P., Ebrahimi, A., Swaminathan, V., Duarte-Guevara, C., Bashir, R. & Alam, M. A., 2016, In: Biosensors. 6, 2, 14.

  Research output: Contribution to journal › Review article › peer-review

  • Lab-on-a-chip
  • Microfluidics
  • Biosensing Techniques
  • Biosensors
  • Costs and Cost Analysis

• Electrical Chips for Biological Point-of-Care Detection

  Reddy, B., Salm, E. & Bashir, R., Jul 11 2016, In: Annual Review of Biomedical Engineering. 18, p. 329-355 27 p.

  Research output: Contribution to journal › Review article › peer-review

  • Biochips
  • Point-of-Care Systems
  • Lab-on-a-chip
  • Multiplexing
  • Health care

• Microfluidics and Nanotechnology for Detection of Global Infectious Diseases

  Damhorst, G. L., Murtagh, M., Rodriguez, W. R. & Bashir, R., Feb 1 2015, In: Proceedings of the IEEE. 103, 2, p. 150-160 11 p., 7067024.

  Research output: Contribution to journal › Review article › peer-review

  • Nanotechnology
  • Microfluidics
  • Viruses
  • Pathogens
  • Industry

• Nano/micro and spectroscopic approaches to food pathogen detection

  Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In: Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

  Research output: Contribution to journal › Review article › peer-review

  • Pathogens
  • Phage display
  • Light scattering
  • Raman spectroscopy
  • Fourier transform infrared spectroscopy

• New technologies for measuring single cell mass

  Popescu, G., Park, K., Mir, M. & Bashir, R., Feb 21 2014, In: Lab on a chip. 14, 4, p. 646-652 7 p.

  Research output: Contribution to journal › Review article › peer-review

  • Cells
  • Imaging techniques
  • Technology
  • Sensors
  • Medicine

• Point-of-care sensors for the management of sepsis

  Reddy, B., Hassan, U., Seymour, C., Angus, D. C., Isbell, T. S., White, K., Weir, W., Yeh, L., Vincent, A. & Bashir, R., Sep 1 2018, In: Nature biomedical engineering. 2, 9, p. 640-648 9 p.

  Research output: Contribution to journal › Review article › peer-review

  • Point-of-Care Systems
  • Sepsis
  • Health
  • Sensors
  • Infection

• Utilization and control of bioactuators across multiple length scales

  Chan, V., Asada, H. H. & Bashir, R., Feb 21 2014, In: Lab on a chip. 14, 4, p. 653-670 18 p.

  Research output: Contribution to journal › Review article › peer-review

  • Tissue
  • Cells
  • Muscle
  • Protozoa
  • Adenosine Triphosphatases
• Short survey

  Microcantilevers track single-cell mass

  Bashir, R., Nov 8 2016, In: Nature Biotechnology. 34, 11, p. 1125-11260 10136 p.

  Research output: Contribution to journal › Short survey › peer-review